[BioC] Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!

[Marc Carlson]

Hi Olivia,

Have you tried using the makecdfenf package to just generate the cdf
package from the affy source cdf file?

http://www.bioconductor.org/packages/devel/bioc/html/makecdfenv.html

And the Affy source files are here:

http://www.affymetrix.com/support/technical/byproduct.affx?product=hugene-1_0-st-v1


  Marc



Prazeres da Costa Olivia wrote:
> Dear all,
>
> I would like to use the affylmGUI package to analyze some Affymetrix Human Gene ST arrays. But it seems that Bioconductor does not provide the annotation package hugene10stv1cdf yet - which is needed to work with the affylmGUI library.
>
> I get the following error message:
>
> Error in getCdfInfo(object):
> Could not obtain CDF environment, problems encountered:
> Specified environment does not contain GuGene-1_0-st-v1 Library - package hugene10stv1cdf not installed Bioconductor - hugene10stv1cdf not available.
>
> How can I proceed to work with the affylmGUI package? Is there a "hugene10stv1cdf" annotation package available, and where do I have to install it, so that I can work with the affylmGUI library?
>
> Thanks for any help!
> Olivia
>
>
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