[BioC] error with accessing biomaRt attributes
Kishor Tappita
kishor.tappita at gmail.com
Wed Sep 16 09:47:07 CEST 2009
Dear List,
I get the below error while trying to access biomaRt attributes.
> getBM(attributes = c("entrezgene"),values = c("202763_at","209310_s_at"),mart =ensembl)
Error in getBM(attributes = c("entrezgene"), values = c("202763_at",
"209310_s_at"), :
The query to the BioMart webservice returned an invalid result:
biomaRt expected a character string of length 1. Please report this to
the mailing list.
> sessionInfo()
R version 2.9.2 (2009-08-24)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RCurl_0.98-1 bitops_1.0-4.1 gene2pathway_1.2.0
org.Dm.eg.db_2.2.11 RBGL_1.20.0 graph_1.22.2
KEGGSOAP_1.18.0
[8] biomaRt_2.0.0 KEGG.db_2.2.11 RSQLite_0.7-2
DBI_0.2-4 AnnotationDbi_1.6.1 Biobase_2.4.1
kernlab_0.9-8
loaded via a namespace (and not attached):
[1] SSOAP_0.4-6 tools_2.9.2 XML_2.5-1
Thanks,
Kishor
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