December 2012 Archives by author

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Starting: Sat Dec 1 00:28:44 CET 2012
Ending: Mon Dec 31 20:20:18 CET 2012
Messages: 376

• [BioC] Drastic change in edgeR p-value calculation?   Lionel (Lee) Brooks 3rd
• [BioC] HT-seq counting - gene vs isoform   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] HT-seq counting - gene vs isoform   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] filtering before using DESeq   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] filtering before using DESeq   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] filtering before using DESeq   Akula, Nirmala (NIH/NIMH) [C]
• [BioC] HT-seq counting - gene vs isoform   Simon Anders
• [BioC] Minimal input data format for bsseq   Aryee, Martin,Ph.D.
• [BioC] flowCore: modifying exprs of a flowFrame   Ariful Azad
• [BioC] Error: cannot allocate vector of size 618.0 Mb   Henrik Bengtsson
• [BioC] Offline Installation of Packages and Dependencies   Nathan Bihlmeyer
• [BioC] Offline Installation of Packages and Dependencies   Nathan Bihlmeyer
• [BioC] bam file in easyRNASeq   Silav Bremos
• [BioC] bam file in easyRNASeq   Silav Bremos
• [BioC] Different number of genes when using HTseq and cuffdiff   Silav Bremos
• [BioC] convert gene name to Affy ID   Julia Brettschneider
• [BioC] DiffBind error   Gordon Brown
• [BioC] Obtaining protein sequence data?   Caitlin
• [BioC] Computer for the analysis of high-throughput genomic data   Capurro, Alberto (Dr.)
• [BioC] Computer for the analysis of high-throughput genomic data   Capurro, Alberto (Dr.)
• [BioC] Computer for the analysis of high-throughput genomic data   Capurro, Alberto (Dr.)
• [BioC] all human gene coordinates   Marc Carlson
• [BioC] geneplotter - buildChromLoc for arrays with no .db package   Marc Carlson
• [BioC] question about TranscriptDb   Marc Carlson
• [BioC] question about TranscriptDb   Marc Carlson
• [BioC] convert gene name to Affy ID   Marc Carlson
• [BioC] need help regarding microarray data analysis using limma   Marc Carlson
• [BioC] need help regarding microarray data analysis using limma   Marc Carlson
• [BioC] convert gene name to Affy ID   Marc Carlson
• [BioC] oligo package   Benilton Carvalho
• [BioC] bout big data set for Affy R packge   Benilton Carvalho
• [BioC] correlation between two pathways' genes   Robert Castelo
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Cook, Malcolm
• [BioC] Exclude overlapping intervals   Cook, Malcolm
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Cook, Malcolm
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Cook, Malcolm
• [BioC] Exclude overlapping intervals   Cook, Malcolm
• [BioC] Exclude overlapping intervals   Cook, Malcolm
• [BioC] Web Developer/Programmer Position at Harvard Medical School   Daniels, Jena Eve
• [BioC] Most diff exp genes are up-regulated... can this be true?   Peter Davidsen
• [BioC] agilent microarrays   Sean Davis
• [BioC] Graphic tracks UCSC genome browser   Sean Davis
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Sean Davis
• [BioC] filtering before using DESeq   Sean Davis
• [BioC] linear models for microarray and RNA-seq   Sean Davis
• [BioC] biomaRt and RCurl   Sean Davis
• [BioC] How to deal with SNPs in microarray   Sean Davis
• [BioC] How to deal with SNPs in microarray   Sean Davis
• [BioC] How to deal with SNPs in microarray   Sean Davis
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Nicolas Delhomme
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Nicolas Delhomme
• [BioC] bam file in easyRNASeq   Nicolas Delhomme
• [BioC] bam file in easyRNASeq   Nicolas Delhomme
• [BioC] problem with manipulating graphs created from dot files read by agread()   Alexis Dinno
• [BioC] oligo package problem reading HuGene arrays   Rob Dunne
• [BioC] bout big data set for Affy R packge   Rob Dunne
• [BioC] bout big data set for Affy R packge   Rob Dunne
• [BioC] pileupAsGRanges hangs   Mark Dunning
• [BioC] pileupAsGRanges hangs   Mark Dunning
• [BioC] pileupAsGRanges depth limit   Mark Dunning
• [BioC] pileupAsGRanges depth limit   Mark Dunning
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] justRMA?   Bhargavi Duvvuri
• [BioC] Installing packages   Rohmatul Fajriyah
• [BioC] Installing packages   Rohmatul Fajriyah
• [BioC] biomaRt and RCurl   John Floan
• [BioC] rTANDEM package -- An R encapsulation of the X!Tandem algorithm   Frederic Fournier
• [BioC] Fwd: rTANDEM package -- An R encapsulation of the X!Tandem algorithm   Frederic Fournier
• [BioC] table for GenomicRanges   Vedran Franke
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Richard Friedman
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Richard Friedman
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Richard Friedman
• [BioC] Error: package/namespace load failed for ‘affycoretools   Richard Friedman
• [BioC] Error: package/namespace load failed for ‘affycoretools   Richard Friedman
• [BioC] Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge   Richard Friedman
• [BioC] mzR Error   Laurent Gatto
• [BioC] mzR Error   Laurent Gatto
• [BioC] mzR Error   Laurent Gatto
• [BioC] correlation between two pathways' genes   Paul Geeleher
• [BioC] geneplotter - buildChromLoc for arrays with no .db package   Lavinia Gordon
• [BioC] geneplotter - buildChromLoc for arrays with no .db   Lavinia Gordon
• [BioC] Graphic tracks UCSC genome browser   Fenton Christopher Graham
• [BioC] lumi NuID to UCSC, for example "xl5dFtdFTQCRSSkbwc" to something like "uc002qsd.4"   Fenton Christopher Graham
• [BioC] readFastq, writeFastq, compressed files and unix pipes.   Ivan Gregoretti
• [BioC] readFastq, writeFastq, compressed files and unix pipes.   Ivan Gregoretti
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Alex Gutteridge
• [BioC] Merging various panel for flow cytometry   A H
• [BioC] visualizing peptide alignments   Juliet Hannah
• [BioC] [package announcement] bumphunter   Kasper Daniel Hansen
• [BioC] Offline Installation of Packages and Dependencies   Kasper Daniel Hansen
• [BioC] problem with manipulating graphs created from dot files read by agread()   Kasper Daniel Hansen
• [BioC] Minimal input data format for bsseq   Kasper Daniel Hansen
• [BioC] edgeR:Differences in results between two different versions of edgeR   Dorota Herman
• [BioC] ChIPpeakAnno to find peaks nearest to miRNA   Holly
• [BioC] Use ChIPpeakAnno to find two-sided nearest genes to a peak   Holly
• [BioC] Most diff exp genes are up-regulated... can this be true?   Wolfgang Huber
• [BioC] linear models for microarray and RNA-seq   Wolfgang Huber
• [BioC] filtering before using DESeq   Wolfgang Huber
• [BioC] filtering before using DESeq   Wolfgang Huber
• [BioC] biomaRt and RCurl   Wolfgang Huber
• [BioC] Can Bioconductor be used offline?   Wolfgang Huber
• [BioC] problem with manipulating graphs created from dot files read by agread()   Wolfgang Huber
• [BioC] vmatchPDict?   David Iles
• [BioC] a problem of trimLRPatterns still confused me   Harris A. Jaffee
• [BioC] a problem of trimLRPatterns still confused me   Harris A. Jaffee
• [BioC] IRanges install error with parallel/mcmapply   Dino Jolic
• [BioC] DEXSeq all p-values are 1   Philip Jonsson
• [BioC] Bioinformatician Job at Pirbright Institute   Jan T Kim
• [BioC] Detection copy number variations with cn.MOPS package   Günter Klambauer
• [BioC] all human gene coordinates   Wim Kreinen
• [BioC] all human gene coordinates   Wim Kreinen
• [BioC] difference results by needle program and pairwiseAlignment   Lapointe, David
• [BioC] Problem loading BED file with BED2RangedData   José Luis Lavín
• [BioC] Problem loading BED file with BED2RangedData   José Luis Lavín
• [BioC] Problem loading BED file with BED2RangedData   José Luis Lavín
• [BioC] Problem loading BED file with BED2RangedData   José Luis Lavín
• [BioC] Problem loading BED file with BED2RangedData   Michael Lawrence
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Michael Lawrence
• [BioC] [Bioc-devel] bigBed support in rtracklayer   Michael Lawrence
• [BioC] table for GenomicRanges   Michael Lawrence
• [BioC] table for GenomicRanges   Michael Lawrence
• [BioC] Graphic tracks UCSC genome browser   Michael Lawrence
• [BioC] Exclude overlapping intervals   Michael Lawrence
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Michael Lawrence
• [BioC] pileupAsGRanges depth limit   Michael Lawrence
• [BioC] pileupAsGRanges depth limit   Michael Lawrence
• [BioC] visualizing peptide alignments   Paul Leo
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Steve Lianoglou
• [BioC] gene set enrichment   Steve Lianoglou
• [BioC] all human gene coordinates   Steve Lianoglou
• [BioC] filter low expression tags   Steve Lianoglou
• [BioC] Fwd: all human gene coordinates   Steve Lianoglou
• [BioC] table for GenomicRanges   Steve Lianoglou
• [BioC] suggest/depends cleanup   Steve Lianoglou
• [BioC] DEXSeq all p-values are 1   Steve Lianoglou
• [BioC] all human gene coordinates   Steve Lianoglou
• [BioC] DEXSeq all p-values are 1   Steve Lianoglou
• [BioC] Different number of genes when using HTseq and cuffdiff   Steve Lianoglou
• [BioC] trouble with installing biomaRt in R-2.15   Steve Lianoglou
• [BioC] Different number of genes when using HTseq and cuffdiff   Steve Lianoglou
• [BioC] Different number of genes when using HTseq and cuffdiff   Steve Lianoglou
• [BioC] linear models for microarray and RNA-seq   Steve Lianoglou
• [BioC] rTANDEM package -- An R encapsulation of the X!Tandem algorithm   Steve Lianoglou
• [BioC] rTANDEM package -- An R encapsulation of the X!Tandem algorithm   Steve Lianoglou
• [BioC] Error: package/namespace load failed for ‘affycoretools   Steve Lianoglou
• [BioC] Counting intervals with or without GRange   Steve Lianoglou
• [BioC] Counting number of intervals with or without GRange   Steve Lianoglou
• [BioC] Computer for the analysis of high-throughput genomic data   Steve Lianoglou
• [BioC] Computer for the analysis of high-throughput genomic data   Steve Lianoglou
• [BioC] Installing packages   Steve Lianoglou
• [BioC] Drastic change in edgeR p-value calculation?   KJ Lim
• [BioC] Fwd: ExomeCopy package error   Michael Love
• [BioC] conceptual question about FDR, FDR adjusted p-value and q-value   Jack Luo
• [BioC] error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)   José LÓPEZ
• [BioC] error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)   José López
• [BioC] error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)   José López
• [BioC] all human gene coordinates   James W. MacDonald
• [BioC] oligo package   James W. MacDonald
• [BioC] oligo package   James W. MacDonald
• [BioC] justRMA?   James W. MacDonald
• [BioC] justRMA?   James W. MacDonald
• [BioC] Building the tomato annotation library(Affy)   James W. MacDonald
• [BioC] justRMA?   James W. MacDonald
• [BioC] justRMA?   James W. MacDonald
• [BioC] suggest/depends cleanup   James W. MacDonald
• [BioC] justRMA?   James W. MacDonald
• [BioC] justRMA?   James W. MacDonald
• [BioC] Anova for microarrays   James W. MacDonald
• [BioC] Oligo package annotation   James W. MacDonald
• [BioC] Oligo package annotation   James W. MacDonald
• [BioC] EdgeR estimateTagwiseDisp()   James W. MacDonald
• [BioC] Oligo package annotation   James W. MacDonald
• [BioC] bout big data set for Affy R packge   James W. MacDonald
• [BioC] pamr   James W. MacDonald
• [BioC] error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)   James W. MacDonald
• [BioC] Error: package/namespace load failed for ‘affycoretools   James W. MacDonald
• [BioC] error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)   James W. MacDonald
• [BioC] correlation between two pathways' genes   Alyaa Mahmoud
• [BioC] correlation between two pathways' genes   Alyaa Mahmoud
• [BioC] Building the tomato annotation library(Affy)   Jorge Mena-Ali
• [BioC] normalization of illumina bead array data   Michele
• [BioC] normalization of illumina bead array data   Michele
• [BioC] gene set enrichment   WATSON Mick
• [BioC] all human gene coordinates   WATSON Mick
• [BioC] Merging various panel for flow cytometry   Mike
• [BioC] flowCore: modifying exprs of a flowFrame   Mike
• [BioC] Job postings - computational biologists in translational science   Crispin Miller
• [BioC] Citations for TRIGGER   Mirza, Nasir
• [BioC] limma - special case of contrasting   Mitja Mitrovic
• [BioC] readAligned with bowtie2 input   Martin Morgan
• [BioC] gene set enrichment   Martin Morgan
• [BioC] pileupAsGRanges hangs   Martin Morgan
• [BioC] readFastq, writeFastq, compressed files and unix pipes.   Martin Morgan
• [BioC] readFastq, writeFastq, compressed files and unix pipes.   Martin Morgan
• [BioC] pileupAsGRanges depth limit   Martin Morgan
• [BioC] pileupAsGRanges depth limit   Martin Morgan
• [BioC] rTANDEM package -- An R encapsulation of the X!Tandem algorithm   Martin Morgan
• [BioC] problem with manipulating graphs created from dot files read by agread()   Martin Morgan
• [BioC] Counting number of intervals with or without GRange   Martin Morgan
• [BioC] Trying to create parallel cluster, but makePSOCKcluster() hangs   Mortimer, Steven
• [BioC] Fwd: Highly Expressed Genes among DE genes in edgeR   Shreyartha Mukherjee
• [BioC] problem with manipulating graphs created from dot files read by agread()   Paul Murrell
• [BioC] Exclude overlapping intervals   Hermann Norpois
• [BioC] Exclude overlapping intervals   Hermann Norpois
• [BioC] Exclude overlapping intervals   Hermann Norpois
• [BioC] Counting intervals with or without GRange   Hermann Norpois
• [BioC] Counting number of intervals with or without GRange   Hermann Norpois
• [BioC] scanVcf: FORMAT 'GT' not found   Valerie Obenchain
• [BioC] flowCore: modifying exprs of a flowFrame   Valerie Obenchain
• [BioC] Correct data analysis with siggenes   Marco Ortiz
• [BioC] Problem loading BED file with BED2RangedData   Ou, Jianhong
• [BioC] Problem loading BED file with BED2RangedData   Ou, Jianhong
• [BioC] Problem loading BED file with BED2RangedData   Ou, Jianhong
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Hervé Pagès
• [BioC] table for GenomicRanges   Hervé Pagès
• [BioC] table for GenomicRanges   Hervé Pagès
• [BioC] table for GenomicRanges   Hervé Pagès
• [BioC] table for GenomicRanges   Hervé Pagès
• [BioC] table for GenomicRanges   Hervé Pagès
• [BioC] difference results by needle program and pairwiseAlignment   Hervé Pagès
• [BioC] difference results by needle program and pairwiseAlignment   Hervé Pagès
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Hervé Pagès
• [BioC] Exclude overlapping intervals   Hervé Pagès
• [BioC] Exclude overlapping intervals   Hervé Pagès
• [BioC] IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named   Hervé Pagès
• [BioC] vmatchPDict?   Hervé Pagès
• [BioC] Exclude overlapping intervals   Hervé Pagès
• [BioC] Why does a call to "unique" removes a DNAStringSet names?   Hervé Pagès
• [BioC] RNA-seq, low count filtering and multiple testing   James Perkins
• [BioC] RNA-seq, low count filtering and multiple testing   James Perkins
• [BioC] a problem of trimLRPatterns still confused me   Wang Peter
• [BioC] difference results by needle program and pairwiseAlignment   Wang Peter
• [BioC] difference results by needle program and pairwiseAlignment   Wang Peter
• [BioC] difference results by needle program and pairwiseAlignment   Wang Peter
• [BioC] bout big data set for Affy R packge   Steve Piccolo
• [BioC] tools for function enrichment analysis   Abhishek Pratap
• [BioC] can't install "goseq" through BioC   Abhishek Pratap
• [BioC] gene set enrichment   Alpesh Querer
• [BioC] gene set enrichment   Alpesh Querer
• [BioC] specifying contrast in edgeR   Alpesh Querer
• [BioC] specifying contrast in edgeR   Alpesh Querer
• [BioC] edgeR detecting expression between conditions   Alpesh Querer
• [BioC] filter low expression tags   Vittoria Roncalli
• [BioC] bioMart query   Natasha Sahgal
• [BioC] gene set enrichment   Michael Salbaum
• [BioC] coXpress package   Seb
• [BioC] coXpress package   Seb
• [BioC] EBcoexpress package   Seb
• [BioC] Windows or Excel to R txt file   Seb
• [BioC] Highly Expressed Genes among DE genes in edgeR   Fatemehsadat Seyednasrollah
• [BioC] Different number of genes when using HTseq and cuffdiff   Fatemehsadat Seyednasrollah
• [BioC] Different number of genes when using HTseq and cuffdiff   Fatemehsadat Seyednasrollah
• [BioC] Different number of genes when using HTseq and cuffdiff   Fatemehsadat Seyednasrollah
• [BioC] RCytoscape on Windows   Paul Shannon
• [BioC] question about KEGGSOAP package   Paul Shannon
• [BioC] gene set enrichment   Reema Singh
• [BioC] gene set enrichment   Gordon K Smyth
• [BioC] gene set enrichment   Gordon K Smyth
• [BioC] gene set enrichment   Gordon K Smyth
• [BioC] edgeR:Differences in results between two different versions of edgeR   Gordon K Smyth
• [BioC] limma - special case of contrasting   Gordon K Smyth
• [BioC] Equivalent of contrasts.fit & multi-contrast decideTests for edgeR?   Gordon K Smyth
• [BioC] RNA-seq, low count filtering and multiple testing   Gordon K Smyth
• [BioC] EdgeR estimateTagwiseDisp()   Gordon K Smyth
• [BioC] edgeR 3.0.6: Possible (small) bug in glmLRT when passing contrasts?   Gordon K Smyth
• [BioC] limma time-course dependent data   Gordon K Smyth
• [BioC] Drastic change in edgeR p-value calculation?   Gordon K Smyth
• [BioC] conceptual question about FDR, FDR adjusted p-value and q-value   Gordon K Smyth
• [BioC] warning during installation of cummeRbund   Lien Spans
• [BioC] warning during installation of cummeRbund   Lien Spans
• [BioC] Can Bioconductor be used offline?   Fedor Syagin
• [BioC] Trying to create parallel cluster, but makePSOCKcluster() hangs   Dan Tenenbaum
• [BioC] IRanges install error with parallel/mcmapply   Dan Tenenbaum
• [BioC] access R server via Amazon Web Services.   Dan Tenenbaum
• [BioC] can't install "goseq" through BioC   Dan Tenenbaum
• [BioC] access R server via Amazon Web Services.   Dan Tenenbaum
• [BioC] can't install "goseq" through BioC   Dan Tenenbaum
• [BioC] warning during installation of cummeRbund   Dan Tenenbaum
• [BioC] coXpress package   Dan Tenenbaum
• [BioC] How to correlate a vector with matrix, then output average cor and its SD   Dan Tenenbaum
• [BioC] Kegg Profile package problem   Dan Tenenbaum
• [BioC] About Rstudio via Amazon web services.   Dan Tenenbaum
• [BioC] About Rstudio via Amazon web services.   Dan Tenenbaum
• [BioC] Kegg Profile package problem   Dan Tenenbaum
• [BioC] Kegg Profile package problem   Dan Tenenbaum
• [BioC] Installing packages   Dan Tenenbaum
• [BioC] Merging various panel for flow cytometry   Julien Textoris
• [BioC] Merging various panel for flow cytometry   Julien Textoris
• [BioC] RNA-seq, low count filtering and multiple testing   Ryan Thompson
• [BioC] question about TranscriptDb   Ryan Thompson
• [BioC] Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks   Ryan C. Thompson
• [BioC] Equivalent of contrasts.fit & multi-contrast decideTests for edgeR?   Ryan C. Thompson
• [BioC] limma - special case of contrasting   Ryan C. Thompson
• [BioC] question about TranscriptDb   Ryan C. Thompson
• [BioC] specifying contrast in edgeR   Ryan C. Thompson
• [BioC] specifying contrast in edgeR   Ryan C. Thompson
• [BioC] Highly Expressed Genes among DE genes in edgeR   Ryan C. Thompson
• [BioC] DEXSeq all p-values are 1   Ryan C. Thompson
• [BioC] question about KEGGSOAP package   Marinkovic Tijana
• [BioC] gene set enrichment   Tim Triche, Jr.
• [BioC] bigBed support in rtracklayer   Tim Triche, Jr.
• [BioC] bigBed support in rtracklayer   Tim Triche, Jr.
• [BioC] [Bioc-devel] bigBed support in rtracklayer   Tim Triche, Jr.
• [BioC] table for GenomicRanges   Tim Triche, Jr.
• [BioC] table for GenomicRanges   Tim Triche, Jr.
• [BioC] table for GenomicRanges   Tim Triche, Jr.
• [BioC] table for GenomicRanges   Tim Triche, Jr.
• [BioC] table for GenomicRanges   Tim Triche, Jr.
• [BioC] Oligo package annotation   Tim Triche, Jr.
• [BioC] conceptual question about FDR, FDR adjusted p-value and q-value   Tim Triche, Jr.
• [BioC] 2013***R Courses*** by XLSolutions Corp at 9 USA Cities: San Francisco, New York, Washington DC, Houston, Boston, Las Vegas, Seattle, etc   Sue Turner
• [BioC] Obtaining protein sequence data?   David Westergaard
• [BioC] question about TranscriptDb   Matthew D. Wilkerson
• [BioC] pileupAsGRanges depth limit   Tengfei Yin
• [BioC] Use ChIPpeakAnno to find two-sided nearest genes to a peak   Zhu, Lihua (Julie)
• [BioC] Use ChIPpeakAnno to find two-sided nearest genes to a peak   Zhu, Lihua (Julie)
• [BioC] Use ChIPpeakAnno to find two-sided nearest genes to a peak   Zhu, Lihua (Julie)
• [BioC] Large datasets in methylumi   Andrew Beggs [guest]
• [BioC] suggest/depends cleanup   Andrew Pennebaker [guest]
• [BioC] Custom CDF for alternative splicing with xps   Binbin [guest]
• [BioC] oligo package   Bruno [guest]
• [BioC] oligo package   Bruno [guest]
• [BioC] Oligo package annotation   Bruno [guest]
• [BioC] cell-cycle models   Dmytro [guest]
• [BioC] EdgeR estimateTagwiseDisp()   Jetse [guest]
• [BioC] convert gene name to Affy ID   Julia Brettschneider [guest]
• [BioC] limma - special case of contrasting   Mitrovic [guest]
• [BioC] RankProd absurd results   Nicolas [guest]
• [BioC] DEXSeq all p-values are 1   Philip [guest]
• [BioC] mzR Error   Prasad Phapale [guest]
• [BioC] HTqPCR, changeCtLayout is mislabeling the rows and is unable to return a qPCRset object   Sam McInturf [guest]
• [BioC] ExomeCopy package error   nat [guest]
• [BioC] normalise many cel files TCBB-2007-11-0161_noCEL.tar   wlangdon [guest]
• [BioC] trouble with installing biomaRt in R-2.15   chawla
• [BioC] agilent microarrays   listas de consultas
• [BioC] Anova for microarrays   listas de consultas
• [BioC] Custom CDF for alternative splicing with xps   cstrato
• [BioC] bout big data set for Affy R packge   cstrato
• [BioC] need help regarding microarray data analysis using limma   J.delasHeras at ed.ac.uk
• [BioC] convert gene name to Affy ID   J.delasHeras at ed.ac.uk
• [BioC] pamr   mbranham at fcm.uncu.edu.ar
• [BioC] Bioconductor Digest, Vol 118, Issue 25   federico.comoglio
• [BioC] linear models for microarray and RNA-seq   capricy gao
• [BioC] linear models for microarray and RNA-seq   capricy gao
• [BioC] linear models for microarray and RNA-seq   capricy gao
• [BioC] linear models for microarray and RNA-seq   capricy gao
• [BioC] How to deal with SNPs in microarray   zhengyu jiang
• [BioC] How to deal with SNPs in microarray   zhengyu jiang
• [BioC] How to deal with SNPs in microarray   zhengyu jiang
• [BioC] limma time-course dependent data   joseph
• [BioC] Detection copy number variations with cn.MOPS package   lpascual
• [BioC] edgeR 3.0.6: Possible (small) bug in glmLRT when passing contrasts?   h.soueidan at nki.nl
• [BioC] problem with manipulating graphs created from dot files read by agread()   alexis.dinno at pdx.edu
• [BioC] scanVcf: FORMAT 'GT' not found   seth redmond
• [BioC] scanVcf: FORMAT 'GT' not found   seth redmond
• [BioC] Kegg Profile package problem   zhao shilin
• [BioC] need help regarding microarray data analysis using limma   varshika singh
• [BioC] Diffbind error   jluis.lavin at unavarra.es
• [BioC] DiffBind error   jluis.lavin at unavarra.es
• [BioC] access R server via Amazon Web Services.   gregory voisin
• [BioC] access R server via Amazon Web Services.   gregory voisin
• [BioC] Problem to download Kegg map from KEGGprofile package   gregory voisin
• [BioC] Kegg Profile package problem   gregory voisin
• [BioC] Kegg Profile package problem   gregory voisin
• [BioC] Kegg Profile package problem   gregory voisin
• [BioC] About Rstudio via Amazon web services.   gregory voisin
• [BioC] Kegg Profile package problem   gregory voisin
• [BioC] Kegg Profile package problem   gregory voisin
• [BioC] bout big data set for Affy R packge   刘伟
• [BioC] Fwd: bout big data set for Affy R packge   刘伟
• [BioC] How to correlate a vector with matrix, then output average cor and its SD   刘伟

Last message date: Mon Dec 31 20:20:18 CET 2012
Archived on: Mon Dec 31 20:20:29 CET 2012

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