[BioC] geneplotter - buildChromLoc for arrays with no .db package

[Marc Carlson]

Hi Lavinia,

Have you tried using this?

http://www.bioconductor.org/packages/2.11/bioc/vignettes/AnnotationForge/inst/doc/SQLForge.pdf


   Marc



On 12/03/2012 04:57 PM, Lavinia Gordon wrote:
> Hi,
> I'd like to use the buildChromLoc function in geneplotter for
> GenomeWideSnp 6.0 Affymetrix arrays.
> As there does not appear to be a suitable .db package available for
> these arrays, I'm looking for any tips/pointers on how to go about this,
> e.g. I'm guessing one option would be to use the org.Hs.eg.db and map my
> 6.0 ids back to these locations, or to create  a .db package using
> AnnotationForge.
> With many thanks for your time,
>
> Lavinia Gordon
>
> Senior Research Officer
> Quantitative Sciences Core, Bioinformatics
>
> Murdoch Childrens Research Institute
> The Royal Children's Hospital
> Flemington Road Parkville Victoria 3052 Australia
> T 03 8341 6221
> www.mcri.edu.au
>
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