[BioC] justRMA?

[James W. MacDonald]

On 12/11/2012 3:53 PM, Bhargavi Duvvuri wrote:
> Hello James,
>
> I am very new to R.
>
> I see minor change in the R version.
>
> My version of R sessionInfo()
>
> *R version 2.15.0 (2012-03-30)*
> Platform: x86_64-unknown-linux-gnu (64-bit)
> loaded via a namespace (and not attached):
> [1] DBI_0.2-5       IRanges_1.16.4  parallel_2.15.0 RSQLite_0.11.2
> [5] stats4_2.15.0   tools_2.15.0
>
> Your version of sessionInfo():
>
> *R version 2.15.1 (2012-06-22)*
> Platform: x86_64-unknown-linux-gnu (64-bit)
> other attached packages:
>
> loaded via a namespace (and not attached):
> [1] DBI_0.2-5       IRanges_1.16.4  parallel_2.15.1 RSQLite_0.11.2
> [5] stats4_2.15.1   tools_2.15.1
>
> Do you think this minor difference would make effect?

No. But if you re-read what I have said below, you will note I am not 
talking about the version of R you are using. Instead, I am talking 
about the version of primeviewhsrefseqcdf you are using.

The package you are using is different from the one I am using, and 
since you didn't load it before running sessionInfo() I have no idea 
what you are using. If the version is the same as mine, then I would 
assume there was a problem somewhere along the line and you need to 
re-install. Well, actually I think you need to re-install regardless.

So try that and see if the updated version of that package looks OK.

Best,

Jim

>
> Thank you
>
> Bhargavi
>
>
> On Tue, Dec 11, 2012 at 3:18 PM, James W. MacDonald <jmacdon at uw.edu 
> <mailto:jmacdon at uw.edu>> wrote:
>
>     R version 2.15.1 (2012-06-22)
>     Platform: x86_64-unknown-linux-gnu (64-bit)
>
>
>
>
> -- 
> Bhargavi Duvvuri M.Sc, Ph.D
> TAS/CAN Postdoctoral Research Fellow
> The Hospital for Sick Children Research Institute
> Division of Cell Biology
> MARS Centre - Toronto Medical Discovery Tower
> 101 College street, Rm 12-401 Bay C
> Toronto, ON, Canada M5G 1L7
> Phone: 416-813-7780
> Fax: 416-813-8883
> email: bhargavi.duvvuri at sickkids.ca <mailto:bhargavi.duvvuri at sickkids.ca>
>

-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099