[BioC] visualizing peptide alignments

[Paul Leo]

There is  the "classic" set of tools for multiple sequence alignment:
http://www.clustal.org/
ClustalX for windows, user friendly. There is "probably" an R
-interface? 




-----Original Message-----
From: Juliet Hannah <juliet.hannah at gmail.com>
To: bioconductor at r-project.org
Subject: [BioC] visualizing peptide alignments
Date: Sun, 2 Dec 2012 23:23:34 -0500

All,

Is there a Bioconductor package by which one can visualize the
alignment of multiple peptide sequences
along a known protein? For example, I would like to provide some
number of short sequences and visualize where
these fall along the full protein sequence.

I'm also curious if anyone knows any other options for this task.

Thanks,

Juliet

_______________________________________________
Bioconductor mailing list
Bioconductor at r-project.org
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor