[BioC] all human gene coordinates

[Marc Carlson]

Hi Wim,

How about this:

library(Homo.sapiens)  ## This loads both of the packages just mentioned.

## This lists all the things you can retrieve:
cols(Homo.sapiens)

## Then you can do something like this
k = keys(Homo.sapiens, keytype="ENTREZID")
res <- select(Homo.sapiens, keys = k, cols =c("TXSTART","TXEND"), 
keytype="ENTREZID")
head(res)


That would get you the starts and ends of all known transcripts for each 
gene in a data.frame.

   Marc



On 12/03/2012 01:47 PM, Wim Kreinen wrote:
> Dear list,
>
> I am completly new to bioconductor and R. And I am looking for a tool
> (library) that provides the coordinates for all human genes. Does it exist?
>
> Thanks
> Wim
>
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