[BioC] justRMA?

[James W. MacDonald]

Hi Bhargavi,

On 12/11/2012 4:14 PM, Bhargavi Duvvuri wrote:
> Hello James,
>
> The one I am using:
>
> [1]*primeviewhsrefseqcdf_1.36.0* AnnotationDbi_1.20.3
> [3] Biobase_2.18.0              BiocGenerics_0.4.0
>
>
> Your primeview package
> *primeviewhsrefseqcdf_16.0.0*
> *
> *
> My windows version:
> *PrimeViewHsREFSEQcdf_1.36.0 *
> *
> *
> As you ca see windows and Linux versions I am using are the same, 
> except for uppercase and lowercase. On windows I get 34901 and on 
> Linux i get 26308*. *If it was for the primeview package version, why 
> would this work on windows?
>
> Please advise.

I have been trying to advise, but you seem intent on not being advised. 
So this is my last shot. Expect no more responses from me on this 
subject. TYPE EXACTLY WHAT I HAVE WRITTEN BELOW AT AN R PROMPT ON YOUR 
LINUX BOX.

library(BiocInstaller)
biocLite("primeviewhsrefseqcdf")


>
> Thank you
> *
> *
> *Bhargavi*
>
>
> On Tue, Dec 11, 2012 at 3:58 PM, James W. MacDonald <jmacdon at uw.edu 
> <mailto:jmacdon at uw.edu>> wrote:
>
>
>
>     On 12/11/2012 3:53 PM, Bhargavi Duvvuri wrote:
>
>         Hello James,
>
>         I am very new to R.
>
>         I see minor change in the R version.
>
>         My version of R sessionInfo()
>
>         *R version 2.15.0 (2012-03-30)*
>
>         Platform: x86_64-unknown-linux-gnu (64-bit)
>         loaded via a namespace (and not attached):
>         [1] DBI_0.2-5       IRanges_1.16.4  parallel_2.15.0 RSQLite_0.11.2
>         [5] stats4_2.15.0   tools_2.15.0
>
>         Your version of sessionInfo():
>
>         *R version 2.15.1 (2012-06-22)*
>
>         Platform: x86_64-unknown-linux-gnu (64-bit)
>         other attached packages:
>
>         loaded via a namespace (and not attached):
>         [1] DBI_0.2-5       IRanges_1.16.4  parallel_2.15.1 RSQLite_0.11.2
>         [5] stats4_2.15.1   tools_2.15.1
>
>         Do you think this minor difference would make effect?
>
>
>     No. But if you re-read what I have said below, you will note I am
>     not talking about the version of R you are using. Instead, I am
>     talking about the version of primeviewhsrefseqcdf you are using.
>
>     The package you are using is different from the one I am using,
>     and since you didn't load it before running sessionInfo() I have
>     no idea what you are using. If the version is the same as mine,
>     then I would assume there was a problem somewhere along the line
>     and you need to re-install. Well, actually I think you need to
>     re-install regardless.
>
>     So try that and see if the updated version of that package looks OK.
>
>     Best,
>
>     Jim
>
>
>         Thank you
>
>         Bhargavi
>
>
>
>         On Tue, Dec 11, 2012 at 3:18 PM, James W. MacDonald
>         <jmacdon at uw.edu <mailto:jmacdon at uw.edu> <mailto:jmacdon at uw.edu
>         <mailto:jmacdon at uw.edu>>> wrote:
>
>             R version 2.15.1 (2012-06-22)
>             Platform: x86_64-unknown-linux-gnu (64-bit)
>
>
>
>
>         -- 
>         Bhargavi Duvvuri M.Sc, Ph.D
>         TAS/CAN Postdoctoral Research Fellow
>         The Hospital for Sick Children Research Institute
>         Division of Cell Biology
>         MARS Centre - Toronto Medical Discovery Tower
>         101 College street, Rm 12-401 Bay C
>         Toronto, ON, Canada M5G 1L7
>         Phone: 416-813-7780 <tel:416-813-7780>
>         Fax: 416-813-8883 <tel:416-813-8883>
>         email: bhargavi.duvvuri at sickkids.ca
>         <mailto:bhargavi.duvvuri at sickkids.ca>
>         <mailto:bhargavi.duvvuri at sickkids.ca
>         <mailto:bhargavi.duvvuri at sickkids.ca>>
>
>
>     -- 
>     James W. MacDonald, M.S.
>     Biostatistician
>     University of Washington
>     Environmental and Occupational Health Sciences
>     4225 Roosevelt Way NE, # 100
>     Seattle WA 98105-6099
>
>
>
>
> -- 
> Bhargavi Duvvuri M.Sc, Ph.D
> TAS/CAN Postdoctoral Research Fellow
> The Hospital for Sick Children Research Institute
> Division of Cell Biology
> MARS Centre - Toronto Medical Discovery Tower
> 101 College street, Rm 12-401 Bay C
> Toronto, ON, Canada M5G 1L7
> Phone: 416-813-7780
> Fax: 416-813-8883
> email: bhargavi.duvvuri at sickkids.ca <mailto:bhargavi.duvvuri at sickkids.ca>
>

-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099