March 2010 Archives by thread

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Starting: Mon Mar 1 09:40:17 CET 2010
Ending: Wed Mar 31 15:20:22 CEST 2010
Messages: 131

• [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Johannes Rainer
  • [Bioc-sig-seq] peak calling/detection algorithm available inBioconductor?   Muino, Jose
  • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Martin Morgan
    • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Johannes Rainer
    • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Michael Lawrence
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Johannes Rainer
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Michael Lawrence
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Johannes Rainer
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Steve Lianoglou
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Michael Lawrence
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Heidi Dvinge
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Johannes Rainer
      • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Deepayan Sarkar
  • [Bioc-sig-seq] peak calling/detection algorithm available in Bioconductor?   Droit Arnaud
• [Bioc-sig-seq] chipseq infrastructure   Michael Lawrence
  • [Bioc-sig-seq] chipseq infrastructure   Raphael Gottardo
    • [Bioc-sig-seq] chipseq infrastructure   Vincent Carey
      • [Bioc-sig-seq] chipseq infrastructure   Vincent Carey
      • [Bioc-sig-seq] chipseq infrastructure   Raphael Gottardo
  • [Bioc-sig-seq] chipseq infrastructure   Deepayan Sarkar
    • [Bioc-sig-seq] chipseq infrastructure   Michael Lawrence
• [Bioc-sig-seq] chipseq infrastructure   Michael Lawrence
• [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools   Steve Lianoglou
  • [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools   Martin Morgan
    • [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools   Martin Morgan
      • [Bioc-sig-seq] Getting optional fields from BAM file using Rsamtools   Steve Lianoglou
• [Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ?   Sirisha Sunkara
  • [Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ?   mtmorgan at fhcrc.org
    • [Bioc-sig-seq] Parallel version of the Biostrings::read.DNAStringSet and write.XStringSet functions ?   Steve Lianoglou
• [Bioc-sig-seq] GenomicFeatures vignette error   joseph
  • [Bioc-sig-seq] GenomicFeatures vignette error   Vincent Carey
• [Bioc-sig-seq] makeTranscriptDbFromUCSC question   joseph
  • [Bioc-sig-seq] makeTranscriptDbFromUCSC question   Marc Carlson
    • [Bioc-sig-seq] makeTranscriptDbFromUCSC question   Hervé Pagès
• [Bioc-sig-seq] chipseq: error in estimate.mean.fraglen method="correlation"   Johannes Rainer
• [Bioc-sig-seq] potential bug either in strandFilter (ShortRead) or estimate.mean.fraglen (chipseq)   Johannes Rainer
  • [Bioc-sig-seq] potential bug either in strandFilter (ShortRead) or estimate.mean.fraglen (chipseq)   Martin Morgan
• [Bioc-sig-seq] genomicFeatures, rangedData vs GRanges objects   pterry at huskers.unl.edu
  • [Bioc-sig-seq] genomicFeatures, rangedData vs GRanges objects   Hervé Pagès
• [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   pterry at huskers.unl.edu
  • [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   Zhu, Julie
    • [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   Wolfgang Huber
      • [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   Zhu, Julie
      • [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   Steffen Durinck
      • [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   Zhu, Julie
    • [Bioc-sig-seq] ChIPpeakAnno, BioMart, getAnnotation 'Exon' error message   Zhu, Julie
• [Bioc-sig-seq] goseq or edgeR error   joseph
  • [Bioc-sig-seq] goseq or edgeR error   Vincent Carey
• [Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps   Aaron Statham
  • [Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps   Seth Falcon
    • [Bioc-sig-seq] BSGenome: Intermittent failure in getSeq, matchPattern and findOverlaps   Seth Falcon
• [Bioc-sig-seq] novoalign format support   Wu, Xiwei
  • [Bioc-sig-seq] novoalign format support   Martin Morgan
    • [Bioc-sig-seq] novoalign format support   Wu, Xiwei
• [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Amy Molesworth
  • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Ivan Gregoretti
  • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Zhu, Julie
    • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Ivan Gregoretti
      • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Zhu, Julie
      • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Ivan Gregoretti
      • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Zhu, Julie
  • [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Zhu, Julie
• [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Zhu, Julie
• [Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function   Zhu, Julie
• [Bioc-sig-seq] Of Mice and Lattice: twenty chromosomes and 7 automatic colours.   Ivan Gregoretti
  • [Bioc-sig-seq] Of Mice and Lattice: twenty chromosomes and 7 automatic colours.   Martin Morgan
• [Bioc-sig-seq] GenomicFeatures, error message   pterry at huskers.unl.edu
  • [Bioc-sig-seq] GenomicFeatures, error message   Hervé Pagès
• [Bioc-sig-seq] mapping coordinates   Jason Lu
  • [Bioc-sig-seq] mapping coordinates   Patrick Aboyoun
    • [Bioc-sig-seq] mapping coordinates   Michael Lawrence
      • [Bioc-sig-seq] mapping coordinates   Patrick Aboyoun
      • [Bioc-sig-seq] mapping coordinates   Michael Lawrence
      • [Bioc-sig-seq] mapping coordinates   Patrick Aboyoun
      • [Bioc-sig-seq] mapping coordinates   Jason Lu
      • [Bioc-sig-seq] mapping coordinates   Michael Lawrence
• [Bioc-sig-seq] RangedData: sorting problem   Zhu, Julie
  • [Bioc-sig-seq] RangedData: sorting problem   Vincent Carey
    • [Bioc-sig-seq] RangedData: sorting problem   Zhu, Julie
  • [Bioc-sig-seq] RangedData: sorting problem   Michael Lawrence
    • [Bioc-sig-seq] RangedData: sorting problem   Zhu, Julie
• [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings.   bullard at stat.Berkeley.EDU
  • [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings.   Hervé Pagès
    • [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings.   Hervé Pagès
• [Bioc-sig-seq] Overlap of multiple RangedData instances.   Ivan Gregoretti
  • [Bioc-sig-seq] Overlap of multiple RangedData instances.   Michael Lawrence
    • [Bioc-sig-seq] Overlap of multiple RangedData instances.   Ivan Gregoretti
      • [Bioc-sig-seq] Overlap of multiple RangedData instances.   Michael Lawrence
      • [Bioc-sig-seq] Overlap of multiple RangedData instances.   Ivan Gregoretti
  • [Bioc-sig-seq] Overlap of multiple RangedData instances.   Zhu, Julie
• [Bioc-sig-seq] Rsamtools   Vincent Carey
• [Bioc-sig-seq] Vector of RangedData   Zhu, Julie
• [Bioc-sig-seq] Vector of RangedData   Michael Lawrence
  • [Bioc-sig-seq] Vector of RangedData   Zhu, Julie
    • [Bioc-sig-seq] Vector of RangedData   Michael Lawrence
• [Bioc-sig-seq] Rsamtools installation   Hervé Pagès
• [Bioc-sig-seq] Favor: ChIPpeakAnno   Zhu, Julie
• [Bioc-sig-seq] GenomicFeatures, biomart support   pterry at huskers.unl.edu
  • [Bioc-sig-seq] GenomicFeatures, biomart support   Hervé Pagès
• [Bioc-sig-seq] .gff from AlignedRead   joseph
  • [Bioc-sig-seq] .gff from AlignedRead   Michael Lawrence
  • [Bioc-sig-seq] .gff from AlignedRead   Martin Morgan
• [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data   Zhu, Julie
  • [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data   Zhu, Julie
    • [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data   Eric Bremer
      • [Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data   Zhu, Julie
• [Bioc-sig-seq] Optimizing the generation of reads w/Biostrings.   James Bullard
• [Bioc-sig-seq] org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem   Zhu, Julie
  • [Bioc-sig-seq] org.Sc.sgd.db: ensembl id or entrez ID to GO term mapping   Zhu, Julie
• [Bioc-sig-seq] locally aligned reads   Hervé Pagès
• [Bioc-sig-seq] Questions about coverage visualization in wig file output   Chen-Yi (Charlie) Chen
• [Bioc-sig-seq] Questions about coverage visualization in wig file output   Chen-Yi Chen
  • [Bioc-sig-seq] Questions about coverage visualization in wig file output   Michael Lawrence
    • [Bioc-sig-seq] Questions about coverage visualization in wig file output   Chen-Yi Chen
• [Bioc-sig-seq] Fastq File size limit in the Short Read Package   Sirisha Sunkara
  • [Bioc-sig-seq] Fastq File size limit in the Short Read Package   Martin Morgan
• [Bioc-sig-seq] Questions about coverage visualization in wig file output   Michael Lawrence
• [Bioc-sig-seq] On re-installing R/Bioconductor.   Ivan Gregoretti
  • [Bioc-sig-seq] On re-installing R/Bioconductor.   Patrick Aboyoun
    • [Bioc-sig-seq] On re-installing R/Bioconductor.   Michael Lawrence
      • [Bioc-sig-seq] On re-installing R/Bioconductor.   Ivan Gregoretti
• [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control   Chen-Yi Chen
  • [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control   Muino, Jose
    • [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control   Chen-Yi Chen
      • [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control   Muino, Jose
  • [Bioc-sig-seq] ChIP-seq analysis in normalization/peak calling between sample and control   Raphael Gottardo
• [Bioc-sig-seq] ExpressionSet alikes for next-gen data   David Rossell
  • [Bioc-sig-seq] ExpressionSet alikes for next-gen data   Michael Lawrence
    • [Bioc-sig-seq] ExpressionSet alikes for next-gen data   David Rossell
      • [Bioc-sig-seq] ExpressionSet alikes for next-gen data   Michael Lawrence
      • [Bioc-sig-seq] ExpressionSet alikes for next-gen data   David Rossell

Last message date: Wed Mar 31 15:20:22 CEST 2010
Archived on: Wed Mar 31 15:21:02 CEST 2010

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