[Bioc-sig-seq] mapping coordinates

Jason Lu jasonlu68 at gmail.com
Tue Mar 16 14:50:39 CET 2010


Hi,

I would like get suggestions on what is the best way to do this. I
have a "SimpleRleList" object, in which the range coordinates are
relevant to an ensembl transcript (ranges from 1 to the total length
of the transcript). I would like to show my data on the UCSC browser,
so I need to map those coordinates to the genome. Currenty I wrote my
own script to do this, based on the exon locations from biomart. There
got to be an easy way to do this, but don't seem to find a quick
answer. Sorry if this has been answered.

Thanks.

Jason



More information about the Bioc-sig-sequencing mailing list