August 2009 Archives by thread

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Starting: Mon Aug 3 21:41:27 CEST 2009
Ending: Mon Aug 31 22:54:06 CEST 2009
Messages: 79

• [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Pratap, Abhishek
  • [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Johannes Waage
    • [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Pratap, Abhishek
      • [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Martin Morgan
      • [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Pratap, Abhishek
      • [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Martin Morgan
      • [Bioc-sig-seq] Calculating/plotting Avg Base Quality   Johannes Waage
• [Bioc-sig-seq] fastq2fasta   joseph
  • [Bioc-sig-seq] fastq2fasta   Martin Morgan
    • [Bioc-sig-seq] fastq2fasta   joseph
      • [Bioc-sig-seq] fastq2fasta   Martin Morgan
• [Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence   Purnachander
  • [Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence   Patrick Aboyoun
    • [Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence   Michael Lawrence
• [Bioc-sig-seq] readAligned in ShortRead package   Ingunn Berget
  • [Bioc-sig-seq] readAligned in ShortRead package   Martin Morgan
    • [Bioc-sig-seq] readAligned in ShortRead package   Martin Morgan
      • [Bioc-sig-seq] readAligned in ShortRead package   Ingunn Berget
• [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Fuad Gwadry
  • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Martin Morgan
    • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Martin Morgan
      • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Fuad Gwadry
      • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Martin Morgan
      • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Fuad Gwadry
      • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Martin Morgan
      • [Bioc-sig-seq] alignQuality   Fuad Gwadry
      • [Bioc-sig-seq] alignQuality   Martin Morgan
      • [Bioc-sig-seq] Reading quality scores from Bowtie (using Piple   Fuad Gwadry
      • [Bioc-sig-seq] Reading quality scores from Bowtie (using Piple   Martin Morgan
  • [Bioc-sig-seq] Problem with ShortRead reading quality scores from bowtie   Martin Morgan
• [Bioc-sig-seq] match, vmatch   James Bullard
  • [Bioc-sig-seq] match, vmatch   Hervé Pagès
• [Bioc-sig-seq] AlignedRead and IRanges   James Bullard
  • [Bioc-sig-seq] AlignedRead and IRanges   Martin Morgan
    • [Bioc-sig-seq] Peaks   Ali Mohamadian
      • [Bioc-sig-seq] Peaks   Deepayan Sarkar
• [Bioc-sig-seq] What to do when single reads make up a large percentage of counts?   Jenny Drnevich
  • [Bioc-sig-seq] What to do when single reads make up a large percentage of counts?   Ludo Pagie
• [Bioc-sig-seq] Assessing Transcriptome Coverage   Abhishek Pratap
• [Bioc-sig-seq] Assessing Transcriptome Coverage   Abhishek Pratap
  • [Bioc-sig-seq] Assessing Transcriptome Coverage   Sean Davis
    • [Bioc-sig-seq] Assessing Transcriptome Coverage   Abhishek Pratap
• [Bioc-sig-seq] Assessing Transcriptome Coverage   Sean Davis
• [Bioc-sig-seq] Assessing Transcriptome Coverage   Abhishek Pratap
  • [Bioc-sig-seq] Assessing Transcriptome Coverage   Michael Dondrup
• [Bioc-sig-seq] Import Solexa Data   John Lande
  • [Bioc-sig-seq] Import Solexa Data   Martin Morgan
• [Bioc-sig-seq] Rle, RleViews   Simon Anders
  • [Bioc-sig-seq] Rle, RleViews   Michael Lawrence
    • [Bioc-sig-seq] Rle, RleViews   Patrick Aboyoun
• [Bioc-sig-seq] reading 454 data with ShortRead   Dan Bolser
  • [Bioc-sig-seq] reading 454 data with ShortRead   Dan Bolser
    • [Bioc-sig-seq] reading 454 data with ShortRead   Martin Morgan
• [Bioc-sig-seq] using shortRead for Bowtie alignments   burak kutlu
  • [Bioc-sig-seq] using shortRead for Bowtie alignments   James Bullard
  • [Bioc-sig-seq] using shortRead for Bowtie alignments   Martin Morgan
    • [Bioc-sig-seq] using shortRead for Bowtie alignments   burak kutlu
• [Bioc-sig-seq] readAligned and coverage methods of the short read package   Sirisha Sunkara
  • [Bioc-sig-seq] readAligned and coverage methods of the short read package   Martin Morgan
    • [Bioc-sig-seq] readAligned and coverage methods of the short read package   Sirisha Sunkara
      • [Bioc-sig-seq] readAligned and coverage methods of the short read package   Martin Morgan
      • [Bioc-sig-seq] frequency of A, C, G, T   Ali Mohamadian
• [Bioc-sig-seq] 2D plots   Bogdan Tanasa
  • [Bioc-sig-seq] 2D plots   Michael Lawrence
    • [Bioc-sig-seq] 2D plots   Bogdan Tanasa
    • [Bioc-sig-seq] 2D plots   gbucci
• [Bioc-sig-seq] tag density plots   Bogdan Tanasa
  • [Bioc-sig-seq] tag density plots   Michael Lawrence
    • [Bioc-sig-seq] tag density plots   Bogdan Tanasa
• [Bioc-sig-seq] ShortRead: puzzled with memory issues over readAligned, readFasta and qa   Leonardo Collado Torres
  • [Bioc-sig-seq] ShortRead: puzzled with memory issues over readAligned, readFasta and qa   Martin Morgan
• [Bioc-sig-seq] frequency of A, C, G, T   Nenad Bartonicek
  • [Bioc-sig-seq] frequency of A, C, G, T   Ali Mohamadian
    • [Bioc-sig-seq] frequency of A, C, G, T   Patrick Aboyoun
• [Bioc-sig-seq] Consolidate AlignedRead objects   Ivan Gregoretti
  • [Bioc-sig-seq] Consolidate AlignedRead objects   Martin Morgan
    • [Bioc-sig-seq] Consolidate AlignedRead objects   Ivan Gregoretti
      • [Bioc-sig-seq] Consolidate AlignedRead objects   Martin Morgan
• [Bioc-sig-seq] AlignedRead and complex subsetting   Ivan Gregoretti

Last message date: Mon Aug 31 22:54:06 CEST 2009
Archived on: Mon Aug 31 22:54:50 CEST 2009

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