[Bioc-sig-seq] How to graphical represent different views on a reference genomic sequence
Purnachander
purna at atc.tcs.com
Tue Aug 4 09:03:27 CEST 2009
Dear all,
I've loaded a complete genome into variable "mychr" and created many
views of it.
How can I represent all the generated views in a graphical plot?
" mychr" is :
1860725-letter "DNAString" instance
seq:
TGGTACCGGAAGCTATGCGTTAAAAAAGGAATAATG...GCAATTACCGGTAACGAAAAATTTCATGCGCCTTTC
Views generated are :
views:
start end width
[1] 2231 11434 9204
[GAGGTATGGAAACCTGATCTAGCC...TTCACCATAGTCGATTATAACAC]
[2] 11784 18426 6643
[GTCACATCCGGGATTTTGCTCTGG...CCTTTTCTTCGTTGAGAAATTTC]
... ... ... ... ...
[366] 1851121 1856489 5369
[GAAGTGGTAACCTCTGATCCTTCA...CATCATCATGAAGTCGAACGGAT]
[367] 1858686 1860020 1335
[TTCAAATGTTCGTAATACTTTTCA...ACGAATCTTGCCAACCTCATAGT]
How can I graphically represent these views on a reference genome?
Regards,
Purna
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