February 2011 Archives by thread

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Starting: Tue Feb 1 01:37:25 CET 2011
Ending: Mon Feb 28 23:41:53 CET 2011
Messages: 503

• [BioC] exporting mas5 data with xps   Addiel de Alba
  • [BioC] exporting mas5 data with xps   cstrato
• [BioC] AgiMicroRna problem   Pedro Lopez-Romero
  • [BioC] AgiMicroRna problem   Paulo Nuin
• [BioC] find overlap of bed files of different length   Duke
  • [BioC] find overlap of bed files of different length   Kasper Daniel Hansen
    • [BioC] find overlap of bed files of different length   Duke
  • [BioC] find overlap of bed files of different length   Michael Lawrence
    • [BioC] find overlap of bed files of different length   Duke
      • [BioC] find overlap of bed files of different length   Michael Lawrence
      • [BioC] find overlap of bed files of different length   Steve Lianoglou
      • [BioC] find overlap of bed files of different length   Martin Morgan
      • [BioC] find overlap of bed files of different length   Hervé Pagès
      • [BioC] find overlap of bed files of different length   Michael Lawrence
      • [BioC] find overlap of bed files of different length   Thomas Girke
      • [BioC] find overlap of bed files of different length   Steve Lianoglou
      • [BioC] find overlap of bed files of different length   Michael Lawrence
      • [BioC] GenomicFeatures : How Entrez gene IDs where associated to transcripts   Arnaud Amzallag
      • [BioC] GenomicFeatures : How Entrez gene IDs where associated to transcripts   Michael Lawrence
      • [BioC] GenomicFeatures : How Entrez gene IDs where associated to transcripts   Arnaud Amzallag
• [BioC] job advertisement   Francesca Buffa
• [BioC] Annotation of Nimblegen Zebrafish Array   Ravi Karra
  • [BioC] Annotation of Nimblegen Zebrafish Array   Sean Davis
    • [BioC] Annotation of Nimblegen Zebrafish Array   Ravi Karra
• [BioC] biomaRt/martservice query error   Ying Zhu
  • [BioC] biomaRt/martservice query error   Steve Lianoglou
    • [BioC] biomaRt/martservice query error   Steffen Durinck
• [BioC] GeneSetTest: which statistics and other measures can be used   r_1470
• [BioC] How can I obtain the expression set from an antibody microarray   nqueralt at clinic.ub.es
  • [BioC] How can I obtain the expression set from an antibody microarray   Wolfgang Huber
• [BioC] convert affy CEL files to data.frame??   D M
  • [BioC] convert affy CEL files to data.frame??   Matthew McCall
    • [BioC] convert affy CEL files to data.frame??   D M
• [BioC] package for protein MS analysis (SELDI-TOF)   Hooiveld, Guido
  • [BioC] package for protein MS analysis (SELDI-TOF)   Laurent Gatto
    • [BioC] package for protein MS analysis (SELDI-TOF)   Hooiveld, Guido
• [BioC] How GAGE handles missing values?   Luo Weijun
• [BioC] NCI pathways to graphNEL   laurent jacob
• [BioC] Recurrent error with Flashclust   Manca Marco (PATH)
  • [BioC] Recurrent error with Flashclust   Peter Langfelder
• [BioC] [COURSE ANNOUNCE] CSAMA 2011 Computational Statistics for Genome Biology   stefano iacus
• [BioC] Adding Illumina GEO GPL IDs to IlluminaIDMapping?   Pan Du
  • [BioC] Adding Illumina GEO GPL IDs to IlluminaIDMapping?   Sean Davis
    • [BioC] Adding Illumina GEO GPL IDs to IlluminaIDMapping?   Pan Du
      • [BioC] Adding Illumina GEO GPL IDs to IlluminaIDMapping?   Sean Davis
• [BioC] NCI pathways to graphNEL   laurent jacob
  • [BioC] NCI pathways to graphNEL   Gilbert Feng
    • [BioC] NCI pathways to graphNEL   laurent jacob
• [BioC] Source files for Agilent/Illumina Array packages?   Denise Mauldin
  • [BioC] Source files for Agilent/Illumina Array packages?   Marc Carlson
• [BioC] flowCore workflows and logical operations on gate views   Alessandro Di Cara
  • [BioC] flowCore workflows and logical operations on gate views   Wong, Chao-Jen
    • [BioC] flowCore workflows and logical operations on gate views   rmailing at di-cara.com
      • [BioC] flowCore workflows and logical operations on gate views   Wong, Chao-Jen
• [BioC] st 1.0 gene quality measures   Richard Friedman
  • [BioC] st 1.0 gene quality measures   Davis, Wade
• [BioC] Factors from ArrayExpress?   Yogesh
  • [BioC] Factors from ArrayExpress?   Wolfgang Huber
  • [BioC] Factors from ArrayExpress?   audrey kauffmann
    • [BioC] Factors from ArrayExpress?   Yogesh
• [BioC] R: Recurrent error with Flashclust   Manca Marco (PATH)
• [BioC] Single nucleotide based RNAseq normalization with edgeR?   Jens Georg
• [BioC] Factors from ArrayExpress?   Yogesh
• [BioC] iFlow and current Bioconductor release   Wong, Chao-Jen
• [BioC] How Does one subset a XStringView or PDict object?   Noah Dowell
  • [BioC] How Does one subset a XStringView or PDict object?   Martin Morgan
    • [BioC] How Does one subset a XStringView or PDict object?   Noah Dowell
• [BioC] Single nucleotide based RNAseq normalization with edgeR   Gordon K Smyth
  • [BioC] Single nucleotide based RNAseq normalization with edgeR   Jens Georg
    • [BioC] Single nucleotide based RNAseq normalization with edgeR   Sridhara Gupta Kunjeti
      • [BioC] Single nucleotide based RNAseq normalization with edgeR   Mark Robinson
      • [BioC] Single nucleotide based RNAseq normalization with edgeR   Sridhara Gupta Kunjeti
      • [BioC] Single nucleotide based RNAseq normalization with edgeR   Mark Robinson
      • [BioC] Single nucleotide based RNAseq normalization with edgeR   Sridhara Gupta Kunjeti
      • [BioC] Single nucleotide based RNAseq normalization with edgeR   Sridhara Gupta Kunjeti
    • [BioC] Single nucleotide based RNAseq normalization with edgeR   Wolfgang Huber
• [BioC] difficulty loading rsbml   Paul Shannon
  • [BioC] difficulty loading rsbml   Dan Tenenbaum
    • [BioC] difficulty loading rsbml   Paul Shannon
      • [BioC] difficulty loading rsbml   Dan Tenenbaum
      • [BioC] difficulty loading rsbml   Michael Lawrence
      • [BioC] difficulty loading rsbml   Vincent Carey
• [BioC] How can reach a specific annotation of phytozome by using biomaRt library   Mao Jianfeng
  • [BioC] How can reach a specific annotation of phytozome by using biomaRt library   Sean Davis
• [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Mao Jianfeng
  • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Martin Morgan
    • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Mao Jianfeng
      • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Vincent Carey
      • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Mao Jianfeng
      • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Vincent Carey
      • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Mao Jianfeng
      • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Vincent Carey
      • [BioC] need helps on Error when package GGtools loading in Mac OSX and Linux server   Mao Jianfeng
• [BioC] How can reach a specific annotation of phytozome by using biomaRt library   Sean Davis
• [BioC] 3D bar plots packages   danieladna
  • [BioC] 3D bar plots packages   Wolfgang Huber
• [BioC] Can not install Ruuid package in a linux server   Mao Jianfeng
  • [BioC] Can not install Ruuid package in a linux server   Vincent Carey
    • [BioC] Can not install Ruuid package in a linux server   Mao Jianfeng
    • [BioC] Can not install Ruuid package in a linux server   Mao Jianfeng
• [BioC] Can not invoke Ruuid package in updated Mac OS X   Mao Jianfeng
  • [BioC] Can not invoke Ruuid package in updated Mac OS X   Vincent Carey
• [BioC] How to make a probe package with the GPL1073.probe file from GEO.   李晓东
  • [BioC] How to make a probe package with the GPL1073.probe file from GEO.   Hooiveld, Guido
• [BioC] R: Recurrent error with Flashclust   Manca Marco (PATH)
• [BioC] Rgraphviz package can not be invoked in Mac OS X   Mao Jianfeng
  • [BioC] Rgraphviz package can not be invoked in Mac OS X   Vincent Carey
    • [BioC] Rgraphviz package can not be invoked in Mac OS X   Mao Jianfeng
• [BioC] identify non-overlapping regions   Chee Lee
  • [BioC] identify non-overlapping regions   Steve Lianoglou
• [BioC] Idea that needs feedback   Radhouane Aniba
• [BioC] Beadarray SAMExample tutorial: readIllumina problem   Sarah Allen
  • [BioC] Beadarray SAMExample tutorial: readIllumina problem   Mike Smith
    • [BioC] Beadarray SAMExample tutorial: readIllumina problem   Sarah Allen
• [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Steve Lianoglou
  • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Michael Lawrence
    • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Steve Lianoglou
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Martin Morgan
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Steve Lianoglou
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Michael Lawrence
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Martin Morgan
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Steve Lianoglou
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Martin Morgan
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Steve Lianoglou
      • [BioC] c()ombining G/IRanges with elementMetadata: feature inquiry/request   Steve Lianoglou
• [BioC] Troubles installing pcaMethods on R2.12.1   Manca Marco (PATH)
• [BioC] Installing development packages   Paulo Nuin
  • [BioC] Installing development packages   Dan Tenenbaum
  • [BioC] Installing development packages   Sean Davis
    • [BioC] Installing development packages   Paulo Nuin
• [BioC] plot3d   danieladna
  • [BioC] plot3d   Dan Tenenbaum
• [BioC] How to get a unique line of annotation for each specific genomic position by using biomaRt package   Mao Jianfeng
  • [BioC] How to get a unique line of annotation for each specific genomic position by using biomaRt package   Steve Lianoglou
    • [BioC] How to get a unique line of annotation for each specific genomic position by using biomaRt package   Mao Jianfeng
      • [BioC] How to get a unique line of annotation for each specific genomic position by using biomaRt package   Steve Lianoglou
      • [BioC] How to get a unique line of annotation for each specific genomic position by using biomaRt package   Mao Jianfeng
• [BioC] node-edge connection   Chris Knight
  • [BioC] node-edge connection   Nishant Gopalakrishnan
• [BioC] GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....   Manca Marco (PATH)
  • [BioC] GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....   Sean Davis
    • [BioC] R: GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....   Manca Marco (PATH)
• [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Mao Jianfeng
  • [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Steve Lianoglou
    • [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Mao Jianfeng
      • [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Steve Lianoglou
• [BioC] working with two factors in DESeq to analyze RNA-seq   Biase, Fernando
  • [BioC] working with two factors in DESeq to analyze RNA-seq   Simon Anders
    • [BioC] working with two factors in DESeq to analyze RNA-seq   Biase, Fernando
• [BioC] Time course experiment....   viritha
  • [BioC] R: Time course experiment....   Manca Marco (PATH)
    • [BioC] Time course experiment....   viritha kaza
      • [BioC] Time course experiment....   James F. Reid
      • [BioC] Time course experiment....   viritha kaza
      • [BioC] R: Time course experiment....   Manca Marco (PATH)
      • [BioC] Time course experiment....   viritha kaza
      • [BioC] R: Time course experiment....   Manca Marco (PATH)
• [BioC] edgeR - expressen between genes   Jenny Drnevich
• [BioC] GOstats and uniprot ids   Paul Rigor
  • [BioC] GOstats and uniprot ids   Marc Carlson
    • [BioC] GOstats and uniprot ids   Paul Rigor
      • [BioC] GOstats and uniprot ids   Marc Carlson
• [BioC] 'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package   Santosh Patnaik
• [BioC] HTqPCR error   Heidi Dvinge
• [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Steve Lianoglou
  • [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Mao Jianfeng
    • [BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package   Steve Lianoglou
• [BioC] samr - extract genes from siggenes.table   Assa Yeroslaviz
  • [BioC] R: samr - extract genes from siggenes.table   Manca Marco (PATH)
    • [BioC] samr - extract genes from siggenes.table   rex.dwyer at syngenta.com
• [BioC] R Courses***February - April 2011 schedule by XLSolutions Corp   Sue Turner
• [BioC] arrayQualityMetrics error   Paulo Nuin
  • [BioC] R: arrayQualityMetrics error   Manca Marco (PATH)
    • [BioC] R: arrayQualityMetrics error   Paulo Nuin
  • [BioC] arrayQualityMetrics error   James F. Reid
    • [BioC] arrayQualityMetrics error   Paulo Nuin
      • [BioC] arrayQualityMetrics error   Wolfgang Huber
      • [BioC] arrayQualityMetrics error   Paulo Nuin
      • [BioC] arrayQualityMetrics error   Wolfgang Huber
      • [BioC] arrayQualityMetrics error   Paulo Nuin
      • [BioC] arrayQualityMetrics error   Wolfgang Huber
      • [BioC] arrayQualityMetrics error   Paulo Nuin
      • [BioC] arrayQualityMetrics error   Wolfgang Huber
      • [BioC] arrayQualityMetrics error   Paulo Nuin
      • [BioC] arrayQualityMetrics error   Wolfgang Huber
      • [BioC] arrayQualityMetrics error   Paulo Nuin
      • [BioC] arrayQualityMetrics error   Wolfgang Huber
      • [BioC] arrayQualityMetrics error   Paulo Nuin
• [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Steve Lianoglou
  • [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Michael Lawrence
    • [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Steve Lianoglou
      • [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Michael Lawrence
      • [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Kasper Daniel Hansen
      • [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Vincent Carey
      • [BioC] [somehow-OT] Storing/quickly accessing "genome length" data.   Michael Lawrence
• [BioC] Time course experiment....   Gordon K Smyth
  • [BioC] Time course experiment....   viritha kaza
• [BioC] working with two factors in DESeq to analyze RNA-seq   Gordon K Smyth
• [BioC] Workshop "Grid and Cloud Computing for Computational (Bio-)Statistics"   Markus Schmidberger
• [BioC] error in import.exon.scheme (XPS package)   Kripa R
  • [BioC] error in import.exon.scheme (XPS package)   cstrato
• [BioC] Error using pdInfoBuilder for NimbleGen Array   Kate Turner
  • [BioC] Error using pdInfoBuilder for NimbleGen Array   Vincent Carey
    • [BioC] Error using pdInfoBuilder v1.14.1 for NimbleGen Array   Kate Turner
      • [BioC] Error using pdInfoBuilder v1.14.1 for NimbleGen Array   Benilton Carvalho
• [BioC] peak and peak width (FWHM) identification   Duke
• [BioC] viewApply Bug   Dario Strbenac
  • [BioC] viewApply Bug   Martin Morgan
• [BioC] Chromosome information in MethyLumiM object   Francesco Mancuso
  • [BioC] Chromosome information in MethyLumiM object   Tim Triche
• [BioC] biomaRt: uniprot_mart   Le Meur-Rouillard, Nolwenn
  • [BioC] biomaRt: uniprot_mart   James W. MacDonald
• [BioC] graph classes: how to combine multiple graphs into a single graph   Paul Shannon
  • [BioC] graph classes: how to combine multiple graphs into a single graph   Moshe Olshansky
  • [BioC] graph classes: how to combine multiple graphs into a single graph   Nishant Gopalakrishnan
• [BioC] duplicate reads in mRNA-Seq   Jason Lu
  • [BioC] duplicate reads in mRNA-Seq   Simon Anders
    • [BioC] duplicate reads in mRNA-Seq   Jason Lu
    • [BioC] duplicate reads in mRNA-Seq   Biase, Fernando
• [BioC] replacing values using their indices   Daniel M.
  • [BioC] replacing values using their indices   Matthew McCall
• [BioC] arrayQualityMetrics is not working   nqueralt at clinic.ub.es
  • [BioC] arrayQualityMetrics is not working   Steve Lianoglou
  • [BioC] arrayQualityMetrics is not working   Wolfgang Huber
• [BioC] [R] RCytoscape setPosition error   Paul Shannon
  • [BioC] RCytoscape setPosition error   Fahim M
    • [BioC] RCytoscape setPosition error   Paul Shannon
      • [BioC] RCytoscape setPosition error   Fahim M
      • [BioC] RCytoscape canvas dimensions [was Re: RCytoscape setPosition error]   Paul Shannon
• [BioC] converting Affy indices to x,y coordinates   Todd Allen
  • [BioC] converting Affy indices to x,y coordinates   Kasper Daniel Hansen
  • [BioC] converting Affy indices to x,y coordinates   Mounts, William
    • [BioC] converting Affy indices to x,y coordinates   Henrik Bengtsson
      • [BioC] converting Affy indices to x,y coordinates   Mounts, William
      • [BioC] converting Affy indices to x,y coordinates   Henrik Bengtsson
      • [BioC] converting Affy indices to x,y coordinates   Todd Allen
• [BioC] Question regarding background correction in lumi package   Pan Du
• [BioC] converting Affy indices to x,y coordinates   Kasper Daniel Hansen
• [BioC] Using GOstats for a non-model organism   Maureen J. Donlin
  • [BioC] Using GOstats for a non-model organism   James W. MacDonald
    • [BioC] Using GOstats for a non-model organism   Maureen J. Donlin
      • [BioC] Using GOstats for a non-model organism   James W. MacDonald
      • [BioC] Using GOstats for a non-model organism   Maureen J. Donlin
• [BioC] Infinium Human Methylation 450k   Dario Greco
  • [BioC] Infinium Human Methylation 450k   Sean Davis
    • [BioC] Infinium Human Methylation 450k   Tim Triche
    • [BioC] Infinium Human Methylation 450k   Paul Leo
• [BioC] error in replacing erroneous values in Harshlight package   vasantika s
• [BioC] limma topTable annotation   David Iles
  • [BioC] limma topTable annotation   James W. MacDonald
• [BioC] display subset of gene symbols in heatmap   Pete Shepard
• [BioC] problems with readIllumina() for many BeadChips   Ina Hoeschele
• [BioC] display subset of gene symbols in heatmap   Pete Shepard
  • [BioC] display subset of gene symbols in heatmap   Tim Triche, Jr.
    • [BioC] display subset of gene symbols in heatmap   Pete Shepard
      • [BioC] display subset of gene symbols in heatmap   Tim Triche, Jr.
      • [BioC] display subset of gene symbols in heatmap   Steve Lianoglou
• [BioC] Specifying node positions in graphs with Rgraphviz   Andreas Yankopolus
• [BioC] extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)   Cook, Malcolm
  • [BioC] extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)   Marc Carlson
    • [BioC] extending GenomicFeatures to makeTranscriptDbFrom other sources (i.e. GFF3)   Cook, Malcolm
• [BioC] parse HomoloGene XML data file   dong he
  • [BioC] Fwd: parse HomoloGene XML data file   dong he
  • [BioC] parse HomoloGene XML data file   Hans-Rudolf Hotz
• [BioC] IPI to entrez id   viritha kaza
• [BioC] IPI to entrez id   Manca Marco (PATH)
• [BioC] Enriched GO questions   Zhu, Lihua (Julie)
• [BioC] limma topTable annotation   Gordon K Smyth
  • [BioC] limma topTable annotation   David Iles
• [BioC] mapping coverage   Adrian Johnson
  • [BioC] mapping coverage   Martin Morgan
    • [BioC] mapping coverage   Tim Triche, Jr.
• [BioC] Help for GOstats packages   Fabrice Tourre
  • [BioC] Help for GOstats packages   Carlson, Marc R
• [BioC] edgeR   Sridhara Gupta Kunjeti
  • [BioC] edgeR   Davis McCarthy
    • [BioC] edgeR   Sridhara Gupta Kunjeti
• [BioC] Is there annotation package for Affymetrix Human Exon 1.0 ST Array on bioconductor?   Jinyan Huang
  • [BioC] Is there annotation package for Affymetrix Human Exon 1.0 ST Array on bioconductor?   Michal Okoniewski
    • [BioC] Is there annotation package for Affymetrix Human Exon 1.0 ST Array on bioconductor?   Carlson, Marc R
      • [BioC] Is there annotation package for Affymetrix Human Exon 1.0 ST Array on bioconductor?   Vincent Carey
      • [BioC] Is there annotation package for Affymetrix Human Exon 1.0 ST Array on bioconductor?   Jinyan Huang
• [BioC] problems with readIllumina() for many BeadChips   Mike Smith
  • [BioC] problems with readIllumina() for many BeadChips   Ina Hoeschele
    • [BioC] problems with readIllumina() for many BeadChips   Ina Hoeschele
• [BioC] PWMmatch: position weight matrix or position frequency matrix?   Zuzanna Makowska
  • [BioC] PWMmatch: position weight matrix or position frequency matrix?   Valerie Obenchain
  • [BioC] PWMmatch: position weight matrix or position frequency matrix?   Hervé Pagès
    • [BioC] PWMmatch: position weight matrix or position frequency matrix?   Hervé Pagès
      • [BioC] PWMmatch: position weight matrix or position frequency matrix?   Hervé Pagès
• [BioC] HTqPCR error   Heidi Dvinge
• [BioC] duplicateCorrelation   Guillaume Meurice
• [BioC] IPI to entrez id   viritha kaza
  • [BioC] IPI to entrez id   Samuel GRANJEAUD - IR/ICIM
    • [BioC] IPI to entrez id   viritha kaza
      • [BioC] IPI to entrez id   Samuel GRANJEAUD - IR/ICIM
  • [BioC] IPI to entrez id   Carlson, Marc R
• [BioC] CDF environment missing for HuGene-1_0-st-v1   John Stylianou
  • [BioC] CDF environment missing for HuGene-1_0-st-v1   James W. MacDonald
• [BioC] problems with readIllumina() for many BeadChips   Mike Smith
  • [BioC] problems with readIllumina() for many BeadChips   Ina Hoeschele
    • [BioC] transformations and expressionQCPipeline   Ina Hoeschele
      • [BioC] transformations and expressionQCPipeline   Mark Dunning
      • [BioC] transformations and expressionQCPipeline   Mark Dunning
      • [BioC] expressionQCPipeline   Ina Hoeschele
• [BioC] [R] Make.cdf.package error   James W. MacDonald
• [BioC] Bayesian additive regression trees (BART) for classification analysis of gene expression data   Santosh Patnaik
• [BioC] Limma vennDiagram function   Lourdes Peña Castillo
  • [BioC] Limma vennDiagram function   James W. MacDonald
• [BioC] graph classes: how to combine multiple graphs into a single graph   Daniela Beißer
• [BioC] ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna   Paola Ostano
• [BioC] How to install BioConductor packages with a computer behind a proxy   Aswin Seshasayee
• [BioC] Dual color chip analysis : duplicateCorrelation   Guillaume Meurice
  • [BioC] Dual color chip analysis : duplicateCorrelation   James W. MacDonald
• [BioC] what's really in hgu133plus2.db?   David Iles
  • [BioC] what's really in hgu133plus2.db?   Tim Triche, Jr.
  • [BioC] what's really in hgu133plus2.db?   Vincent Carey
  • [BioC] what's really in hgu133plus2.db?   Carlson, Marc R
  • [BioC] what's really in hgu133plus2.db?   James W. MacDonald
    • [BioC] what's really in hgu133plus2.db?   David Iles
      • [BioC] what's really in hgu133plus2.db?   James W. MacDonald
• [BioC] duplicateCorrelation   Gordon K Smyth
• [BioC] what's really in hgu133plus2.db?   Tim Yates
  • [BioC] what's really in hgu133plus2.db?   Michal Okoniewski
    • [BioC] what's really in hgu133plus2.db?   Tim Yates
• [BioC] Is there annotation package for Affymetrix Human, Exon 1.0 ST Array on bioconductor?   rcaloger
• [BioC] Eleonore Gravier/CURIE est absent(e).   eleonore.gravier at curie.net
• [BioC] rtracklayer export fails   Michael Dondrup
  • [BioC] rtracklayer export fails   Vincent Carey
    • [BioC] rtracklayer export fails   Michael Lawrence
      • [BioC] rtracklayer export fails   Michael Dondrup
      • [BioC] rtracklayer export fails   Michael Dondrup
      • [BioC] rtracklayer export fails   Michael Lawrence
• [BioC] Problem loading saved GenomicRanges object   Michael Dondrup
  • [BioC] Problem loading saved GenomicRanges object   Vincent Carey
    • [BioC] Problem loading saved GenomicRanges object   Michael Dondrup
• [BioC] announcing a new version of arrayQualityMetrics in the development branch   Wolfgang Huber
• [BioC] [R] Make.cdf.package error   Elodie MARQUAND
• [BioC] problems connecting to Biomart today?   J.delasHeras at ed.ac.uk
  • [BioC] problems connecting to Biomart today?   Rhoda Kinsella
    • [BioC] problems connecting to Biomart today?   J.delasHeras at ed.ac.uk
      • [BioC] problems connecting to Biomart today?   Rhoda Kinsella
  • [BioC] problems connecting to Biomart today?   Hans-Rudolf Hotz
    • [BioC] problems connecting to Biomart today?   Rhoda Kinsella
      • [BioC] problems connecting to Biomart today?   J.delasHeras at ed.ac.uk
• [BioC] unable to install qvalue..   Saurabh Bundela
  • [BioC] unable to install qvalue..   Martin Morgan
    • [BioC] unable to install qvalue..   Simon Anders
      • [BioC] unable to install qvalue..   David Iles
      • [BioC] unable to install qvalue..   Simon Anders
      • [BioC] unable to install qvalue..   Vincent Carey
      • [BioC] unable to install qvalue..   Simon Anders
      • [BioC] unable to install qvalue..   James W. MacDonald
      • [BioC] unable to install qvalue..   Vincent Carey
      • [BioC] unable to install qvalue..   David Iles
• [BioC] Useful information about Ensembl release 61 mart databases   Rhoda Kinsella
• [BioC] problems with biomaRt   Stefanie Carola Gerstberger
  • [BioC] problems with biomaRt   Steffen Durinck
    • [BioC] problems with biomaRt   Stefanie Gerstberger
• [BioC] miRNA-1_0_2Xgain win binary packages   cunye qiao
  • [BioC] miRNA-1_0_2Xgain win binary packages   Hooiveld, Guido
  • [BioC] miRNA-1_0_2Xgain win binary packages   Vincent Carey
• [BioC] basic stats for methylC-seq type of methylation data   Steve Shen
• [BioC] problem with biomaRt   Stefanie Carola Gerstberger
  • [BioC] problem with biomaRt   James W. MacDonald
    • [BioC] problem with biomaRt   Teresa Colombo
      • [BioC] problem with biomaRt   Rhoda Kinsella
      • [BioC] problem with biomaRt   Teresa Colombo
• [BioC] Distribution of negative controls on Illumina HT12-v4 chips (double background?)   Arnar Flatberg
  • [BioC] Distribution of negative controls on Illumina HT12-v4 chips (double background?)   Wei Shi
    • [BioC] Distribution of negative controls on Illumina HT12-v4 chips (double background?)   Arnar Flatberg
      • [BioC] Distribution of negative controls on Illumina HT12-v4 chips (double background?)   Arnar Flatberg
      • [BioC] Distribution of negative controls on Illumina HT12-v4 chips (double background?)   Wei Shi
• [BioC] LIMMA package differentially expressed genes   Prasad Siddavatam
  • [BioC] LIMMA package differentially expressed genes   Gordon K Smyth
• [BioC] load and normalize arrays from different platform   Wendy Qiao
  • [BioC] load and normalize arrays from different platform   James W. MacDonald
    • [BioC] load and normalize arrays from different platform   Moshe Olshansky
      • [BioC] load and normalize arrays from different platform   Wendy Qiao
      • [BioC] load and normalize arrays from different platform   Moshe Olshansky
      • [BioC] load and normalize arrays from different platform   Henrik Bengtsson
• [BioC] Explained variance for ICA   Pavel Goldstein
  • [BioC] Explained variance for ICA   amit mandal
    • [BioC] Explained variance for ICA   Pavel Goldstein
• [BioC] affxparser/convertCel() error "Internal error: Failed to extract 'pixelRange' and 'sampleName' from DAT header" (Was: Re: load and normalize arrays from different platform)   Henrik Bengtsson
  • [BioC] affxparser/convertCel() error "Internal error: Failed to extract 'pixelRange' and 'sampleName' from DAT header" (Was: Re: load and normalize arrays from different platform)   Henrik Bengtsson
• [BioC] LIMMA   Daniel Fortin
  • [BioC] LIMMA   Wolfgang Huber
• [BioC] biomaRt still in trouble   John Lande
  • [BioC] biomaRt still in trouble   Steffen Durinck
    • [BioC] biomaRt still in trouble   Steffen Durinck
• [BioC] Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6   Aszodi,Andras
  • [BioC] Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6   Dan Tenenbaum
  • [BioC] Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6   Aszodi,Andras
  • [BioC] Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6   Dan Tenenbaum
  • [BioC] Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6   Martin Morgan
  • [BioC] Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6   Aszodi,Andras
• [BioC] Cell DNA content data normalization and gating   Xian Zhang
  • [BioC] Cell DNA content data normalization and gating   Greg Finak
• [BioC] heatmap.2 how to remove row separator   Benoît Ballester
  • [BioC] heatmap.2 how to remove row separator   James W. MacDonald
    • [BioC] heatmap.2 how to remove row separator   Benoît Ballester
      • [BioC] heatmap.2 how to remove row separator   Wolfgang Huber
      • [BioC] heatmap.2 how to remove row separator   Wolfgang Huber
• [BioC] FlowViz log ticks trick   Davide Rambaldi
  • [BioC] FlowViz log ticks trick   Greg Finak
    • [BioC] FlowViz log ticks trick   Davide Rambaldi
• [BioC] Error GOseq   Biase, Fernando
  • [BioC] Error GOseq   Matthew Young
• [BioC] RMA and combining probesets into entrez genes   Brian Tsai
  • [BioC] RMA and combining probesets into entrez genes   amit mandal
  • [BioC] RMA and combining probesets into entrez genes   João Moura
• [BioC] How to set variable to NOT NULL using RODBC package   Qian Liu
• [BioC] Change in URL for PFAM links in GOstats (PFAMHyperGResult)   Davis, Wade
  • [BioC] Change in URL for PFAM links in GOstats (PFAMHyperGResult)   Marc Carlson
• [BioC] RMA in Bioconductor versus APT - missing probesets   Michal Blazejczyk
  • [BioC] RMA in Bioconductor versus APT - missing probesets   Hooiveld, Guido
  • [BioC] RMA in Bioconductor versus APT - missing probesets   cstrato
    • [BioC] RMA in Bioconductor versus APT - missing probesets   Michal Blazejczyk
      • [BioC] RMA in Bioconductor versus APT - missing probesets   cstrato
• [BioC] edgeR - p.adjust   Sridhara Gupta Kunjeti
  • [BioC] edgeR - p.adjust   Steve Lianoglou
    • [BioC] edgeR - p.adjust   Sridhara Gupta Kunjeti
• [BioC] edgeR: calcNormFactors   Wang, Guoli (NIH/CIT) [C]
  • [BioC] edgeR: calcNormFactors   Mark Robinson
• [BioC] question about PCA   Xiaowei Guan
  • [BioC] question about PCA   amit mandal
• [BioC] training data set for EdgeR   shaohua.fan
  • [BioC] training data set for EdgeR   Mark Robinson
    • [BioC] training data set for EdgeR   shaohua.fan
• [BioC] Affymetrix miRNA Arrays   Assa Yeroslaviz
• [BioC] LIMMA (locale problem with read.maimages)   Gordon K Smyth
• [BioC] Where can i find/install package -"BSgenome.Mmusculus.UCSC.mm9" in BSgenome   Hervé Pagès
• [BioC] snapCGH doesn't work: unable to load shared library ...   Gregory Gentlemen
  • [BioC] snapCGH doesn't work: unable to load shared library ...   Martin Morgan
• [BioC] intraspotCorrelation vs duplicateCorrelation   Naomi Altman
  • [BioC] intraspotCorrelation vs duplicateCorrelation   Gordon K Smyth
    • [BioC] intraspotCorrelation vs duplicateCorrelation   Naomi Altman
• [BioC] HTqPCR package: plotCtDensity and modification in bandwith parameter   Jordi Altirriba
• [BioC] HELP: MICROARRAYS   Poonam **
  • [BioC] R: HELP: MICROARRAYS   Manca Marco (PATH)
  • [BioC] HELP: MICROARRAYS   Steve Lianoglou
  • [BioC] HELP: MICROARRAYS   Steve Lianoglou
• [BioC] Normalization quality assessment tools?   Giulio Di Giovanni
  • [BioC] Normalization quality assessment tools?   Wolfgang Huber
    • [BioC] Normalization quality assessment tools?   Giulio Di Giovanni
• [BioC] Lumi: LumiT vst transform error   Sarah Allen
  • [BioC] Lumi: LumiT vst transform error   Pan Du
  • [BioC] Lumi: LumiT vst transform error   Pan Du
• [BioC] Mapping genomic coordinates to transcript coordinates? (revived)   Cook, Malcolm
  • [BioC] Mapping genomic coordinates to transcript coordinates? (revived)   Chris Fields
• [BioC] GO term enrichment   Ludwig Eichinger
  • [BioC] GO term enrichment   Ludwig Eichinger
    • [BioC] GO term enrichment   Thao Phuong
    • [BioC] GO term enrichment   Davis McCarthy
  • [BioC] GO term enrichment   Martin Morgan
  • [BioC] GO term enrichment   Marc Carlson
• [BioC] Need help finding "aroma" package for R2.9   Ochsner, Scott A
  • [BioC] Need help finding "aroma" package for R2.9   Steve Lianoglou
    • [BioC] Need help finding "aroma" package for R2.9   Ochsner, Scott A
      • [BioC] Need help finding "aroma" package for R2.9   Henrik Bengtsson
• [BioC] EBImage: alpha plane in grey scale   Samuel GRANJEAUD - IR/ICIM
  • [BioC] EBImage: alpha plane in grey scale   Gregoire Pau
    • [BioC] EBImage: alpha plane in grey scale   Samuel GRANJEAUD - IR/ICIM
      • [BioC] EBImage: alpha plane in grey scale   Gregoire Pau
      • [BioC] EBImage: alpha plane in grey scale   Samuel GRANJEAUD - IR/ICIM
• [BioC] package structure   Robert M. Flight
  • [BioC] package structure   Valerie Obenchain
    • [BioC] package structure   Vincent Carey
      • [BioC] package structure   Robert M. Flight
• [BioC] GGtools and GGBase installation problems   Neel Aluru
  • [BioC] GGtools and GGBase installation problems   Vincent Carey
• [BioC] GO with R and Bioconductor   duke.lists at gmx.com
  • [BioC] GO with R and Bioconductor   Vincent Carey
    • [BioC] GO with R and Bioconductor   Duke
      • [BioC] GO with R and Bioconductor   Vincent Carey
      • [BioC] GO with R and Bioconductor   Duke
      • [BioC] GO with R and Bioconductor   Vincent Carey
• [BioC] edgeR glm fit error   Colin Maxwell
  • [BioC] edgeR glm fit error   Gordon K Smyth
• [BioC] Mapping microarray probes to the genome using findOverlaps   Ravi Karra
  • [BioC] Mapping microarray probes to the genome using findOverlaps   Sean Davis
    • [BioC] Mapping microarray probes to the genome using findOverlaps   Ravi Karra
      • [BioC] Mapping microarray probes to the genome using findOverlaps   Sean Davis
• [BioC] Distribution of negative controls on Illumina HT12-v4 chips   Gordon K Smyth
  • [BioC] Distribution of negative controls on Illumina HT12-v4 chips   Ina Hoeschele
• [BioC] error in bioconductor installation   kalesh karun
  • [BioC] error in bioconductor installation   Steve Lianoglou
• [BioC] Detection calls and LIMMA   avehna
  • [BioC] Detection calls and LIMMA   Wolfgang Huber
    • [BioC] Detection calls and LIMMA   avehna
• [BioC] normalization problem   Sukhbir Rattan
  • [BioC] normalization problem   Sean Davis
• [BioC] quality control of affy Chips for miRNA   Assa Yeroslaviz
  • [BioC] quality control of affy Chips for miRNA   James W. MacDonald
• [BioC] Question about   Sean Davis
• [BioC] Call for help about your Chippeakanno R package   Zhu, Lihua (Julie)
• [BioC] Which resources for pathway analysis?   January Weiner
  • [BioC] Which resources for pathway analysis?   Gilbert Feng
• [BioC] HTqPCR query   Heidi Dvinge
• [BioC] nested effects?   Anand Patel
• [BioC] rpy save session and package downloads   rna seq
  • [BioC] rpy save session and package downloads   Sean Davis

Last message date: Mon Feb 28 23:41:53 CET 2011
Archived on: Mon Feb 28 23:38:35 CET 2011

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