[BioC] Can not install Ruuid package in a linux server

[Mao Jianfeng]

Dear Vincent,

It got done following your advice, by installation of the library in
linux server before installation of Ruuid and GGtools packages.

Thanks a lot.

Jian-Feng, Mao




2011/2/7 Vincent Carey <stvjc at channing.harvard.edu>:
> get a sysadmin to do something like
>
> sudo yum install glib
>
> and try again
>
> you are missing basic development infrastructure on your linux machine
>
> On Mon, Feb 7, 2011 at 2:59 AM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
>> Dear listers,
>>
>> I am facing problem of installing Ruuid package in a linux server.
>> Please give some helps.
>>
>> Thanks in advance.
>>
>> Jian-Feng,
>>
>>
>> #################(1) install Ruuid package from
>> binary###########################################
>>> source("http://bioconductor.org/biocLite.R")
>> BioC_mirror = http://www.bioconductor.org
>> Change using chooseBioCmirror().
>>> biocLite('Ruuid')
>> Using R version 2.12.0, biocinstall version 2.7.4.
>> Installing Bioconductor version 2.7 packages:
>> [1] "Ruuid"
>> Please wait...
>>
>> Installing package(s) into ‘/ebio/abt6/jmao/rpacks’
>> (as ‘lib’ is unspecified)
>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/Ruuid_1.28.0.tar.gz'
>> Content type 'application/x-gzip' length 71906 bytes (70 Kb)
>> opened URL
>> ==================================================
>> downloaded 70 Kb
>>
>> * installing *source* package ‘Ruuid’ ...
>> checking for pkg-config... /usr/bin/pkg-config
>> checking for glib-config... no
>> checking for glib-2.0... configure: error: No glib package information found
>> ERROR: configuration failed for package ‘Ruuid’
>> * removing ‘/ebio/abt6/jmao/rpacks/Ruuid’
>>
>> The downloaded packages are in
>>        ‘/tmp/RtmpGQAHn2/downloaded_packages’
>> Warning message:
>> In install.packages(pkgs = pkgs, repos = repos, ...) :
>>  installation of package 'Ruuid' had non-zero exit status
>>> library(Ruuid)
>> Error in library(Ruuid) : there is no package called 'Ruuid'
>>
>> #####################(2) install Ruuid package from
>> source#######################################
>>> biocLite("Ruuid", type="source")
>> Using R version 2.12.0, biocinstall version 2.7.4.
>> Installing Bioconductor version 2.7 packages:
>> [1] "Ruuid"
>> Please wait...
>>
>> Installing package(s) into ‘/ebio/abt6/jmao/rpacks’
>> (as ‘lib’ is unspecified)
>> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/Ruuid_1.28.0.tar.gz'
>> Content type 'application/x-gzip' length 71906 bytes (70 Kb)
>> opened URL
>> ==================================================
>> downloaded 70 Kb
>>
>> * installing *source* package ‘Ruuid’ ...
>> checking for pkg-config... /usr/bin/pkg-config
>> checking for glib-config... no
>> checking for glib-2.0... configure: error: No glib package information found
>> ERROR: configuration failed for package ‘Ruuid’
>> * removing ‘/ebio/abt6/jmao/rpacks/Ruuid’
>>
>> The downloaded packages are in
>>        ‘/tmp/RtmpGQAHn2/downloaded_packages’
>> Warning message:
>> In install.packages(pkgs = pkgs, repos = repos, ...) :
>>  installation of package 'Ruuid' had non-zero exit status
>>
>>
>>
>> #######################(1) my version and
>> sessionInfo()#####################################
>>> version
>>               _
>> platform       x86_64-unknown-linux-gnu
>> arch           x86_64
>> os             linux-gnu
>> system         x86_64, linux-gnu
>> status
>> major          2
>> minor          12.0
>> year           2010
>> month          10
>> day            15
>> svn rev        53317
>> language       R
>> version.string R version 2.12.0 (2010-10-15)
>>> sessionInfo()
>> R version 2.12.0 (2010-10-15)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> loaded via a namespace (and not attached):
>> [1] tools_2.12.0
>>
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>