[BioC] Can not invoke Ruuid package in updated Mac OS X

Mao Jianfeng jianfeng.mao at gmail.com
Mon Feb 7 09:10:39 CET 2011


Dear listers,

I installed Ruuid package in Mac OS X, but it can be invoke. Could you
please give me any directions?

Thanks in advance.

############################################(1) installation
> source("http://bioconductor.org/biocLite.R")
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
> biocLite('Ruuid')
Using R version 2.12.1, biocinstall version 2.7.4.
Installing Bioconductor version 2.7 packages:
[1] "Ruuid"
Please wait...

trying URL 'http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/Ruuid_1.28.0.tgz'
Content type 'application/x-gzip' length 84154 bytes (82 Kb)
opened URL
==================================================
downloaded 82 Kb


The downloaded packages are in
	/var/folders/Ic/IcbLL0ELH9uqwZPaFP9Nz++++TQ/-Tmp-//Rtmpiwx1Ik/downloaded_packages

############################################(2) invoking
> library(Ruuid)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid/libs/x86_64/Ruuid.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid/libs/x86_64/Ruuid.so,
6): Library not loaded:
/Library/Frameworks/GTK+.framework/Versions/2.18.X11/Resources/lib/libglib-2.0.0.dylib
  Referenced from:
/Library/Frameworks/R.framework/Versions/2.12/Resources/library/Ruuid/libs/x86_64/Ruuid.so
  Reason: image not found
Error: package/namespace load failed for 'Ruuid'

############################################(3) sessionInfo() and version
> sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] C/UTF-8/C/C/C/C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_2.12.1
> version
               _
platform       x86_64-apple-darwin9.8.0
arch           x86_64
os             darwin9.8.0
system         x86_64, darwin9.8.0
status
major          2
minor          12.1
year           2010
month          12
day            16
svn rev        53855
language       R
version.string R version 2.12.1 (2010-12-16)


-- 
Jian-Feng, Mao



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