[BioC] GGtools and GGBase installation problems

[Neel Aluru]

Hello,

I have installed GGtools and GGBase and when I try to load them, I keep getting the following error messages. I really appreciate if someone can help me in sorting this problem.

Thank you,
Neel


[R.app GUI 1.35 (5665) x86_64-apple-darwin9.8.0]

[Workspace restored from /Users/naluru/.RData]
[History restored from /Users/naluru/.Rapp.history]

Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Error in as.environment(pos) : 
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
Error: package/namespace load failed for 'GGBase'
Loading required package: GGBase
Error in as.environment(pos) : 
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
Error: package 'GGBase' could not be loaded

> sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RSQLite_0.9-4    DBI_0.2-5        snpMatrix_1.14.1 survival_2.36-2  Biobase_2.10.0  

loaded via a namespace (and not attached):
[1] annotate_1.28.0      AnnotationDbi_1.12.0 graph_1.28.0         GSEABase_1.12.2      tools_2.12.1        
[6] XML_3.2-0            xtable_1.5-6        
> 


Neel Aluru
Visiting Investigator
Biology Department 
Redfield Building 3-04
Woods Hole Oceanographic Institution
45, Water Street
Woods Hole, MA

naluru at whoi.edu
508-289-3607