[BioC] can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package

[Steve Lianoglou]

On Tue, Feb 8, 2011 at 12:54 PM, Mao Jianfeng <jianfeng.mao at gmail.com> wrote:
> Dear Steve,
>
> Sorry. My bad english.
>
> In short, I have genomic variants (for example SNPs, indels or CNVs),
> all which were recorded by the specific genomic region (Chromosome,
> start position, end position).
>
> I want to get these genomic variants annotated (this means link each
> of them to gene, protein, pathway they corresponds to).
>
> Can you understand the forward sentences? Steve? If you can not, I
> want to rewrite what I want to express.

I think I do.

Sorry, I didn't mean to imply that I couldn't parse your English, I'm
just confused since thought my previous post answers your question.
No?

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact