[BioC] Need help finding "aroma" package for R2.9

[Henrik Bengtsson]

Hi,

sorry for the delay.  I've just added a page to the Aroma Project website

 http://www.aroma-project.org/packages/aroma/

which shows to install the "original" aroma package (extending the sma
package), which, despite it's name is quite different from all other
packages (aroma.affymetrix, aroma.cn, aroma.core, ...) on the Aroma
Project website.

/Henrik

PS. Your manual installation approach would work as well.


On Fri, Feb 25, 2011 at 12:07 PM, Ochsner, Scott A <sochsner at bcm.edu> wrote:
>  Hello again,
>
> Just to follow up:  thanks to a lead from Steve I was able to track down archived versions of the aroma package and its various dependencies at http://www.braju.com/R/repos/
>
> Scott
>
>
> Scott A. Ochsner, PhD
> One Baylor Plaza BCM130, Houston, TX 77030
> Voice: (713) 798-6227  Fax: (713) 790-1275
> -----Original Message-----
> From: Steve Lianoglou [mailto:mailinglist.honeypot at gmail.com]
> Sent: Friday, February 25, 2011 10:33 AM
> To: Ochsner, Scott A
> Cc: bioconductor at stat.math.ethz.ch
> Subject: Re: [BioC] Need help finding "aroma" package for R2.9
>
> Hi,
>
> On Fri, Feb 25, 2011 at 11:24 AM, Ochsner, Scott A <sochsner at bcm.edu> wrote:
>> Hello,
>>
>> I'm trying to repeat an old two-color array analysis published in 2008 which used R2.9.  The authors used the "kth" package which depends on the "aroma" package.  Can anyone point me to a directory where I might find the "aroma" package suitable for use with R2.9.  I've tried to use "aroma.core" without success.  The "kth" package, not surprisingly, would not recognize "aroma.core".
>
> I think you'll want to start your search here:
>
> http://www.aroma-project.org/
>
> Although, the lead developer for the aroma project is also on this
> list, so perhaps he'll have some more useful tips for you.
>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
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