[BioC] difficulty loading rsbml
Paul Shannon
pshannon at systemsbiology.org
Sun Feb 6 05:23:19 CET 2011
The specific error is see (text below) suggests that libsbml is not being found. ASTNode appears to be a symbol in libsbml
biocLite ('rbsml')
installing /usr/local/lib/libsbml.4.2.0.dylib
export DYLD_LIBRARY_PATH=/usr/local/lib
R
> library (rsbml)
I get this error message:
Error : .onLoad failed in loadNamespace() for 'rsbml', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/rsbml/libs/x86_64/rsbml.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/rsbml/libs/x86_64/rsbml.so, 6): Symbol not found: _ASTNode_addChild
Referenced from: /Library/Frameworks/R.framework/Versions/2.12/Resources/library/rsbml/libs/x86_64/rsbml.so
Expected in: dynamic lookup
Error: package/namespace load failed for 'rsbml'
rsbml.so is where it is supposed to be:
/Library/Frameworks/R.framework/Versions/2.12/Resources/library/rsbml/libs/x86_64:
-rwxr-xr-x 1 pshannon admin 95328 Oct 19 22:08 rsbml.so
Any suggestions? Thanks.
- Paul
> sessionInfo ()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.utf-8/en_US.utf-8/C/C/en_US.utf-8/en_US.utf-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] graph_1.29.2 tools_2.12.1
More information about the Bioconductor
mailing list