[BioC] GO term enrichment

[Davis McCarthy]

Hi Ludwig

The goseq package is designed for this purpose.
http://bioconductor.org/help/bioc-views/2.7/bioc/html/goseq.html

Cheers
Davis


On Feb 24, 2011, at 7:18 PM, Ludwig Eichinger wrote:

> Dear colleagues,
> 
> we would like to analyse gene ontology term enrichment for a RNAseq
> experiment of human cells. Can we do this with bioconductor (which R
> version do we need) and if yes, how can we do it?
> 
> Thank you very much for your advice.
> 
> Best regards
> 
> Ludwig Eichinger
> 
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Prof. Dr. Ludwig Eichinger
> Centre for Biochemistry
> Medical Faculty
> University of Cologne
> Joseph-Stelzmann-Str. 52
> D-50931 Koeln
> 
> Tel. 0049-221-4786928
> FAX  0049-221-4786979
> 
> Dictyostelium Genome Project and Fuctional Analysis:
> http://www.uni-koeln.de/med-fak/biochemie/transcriptomics/
> http://www.uni-koeln.de/dictyostelium/
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 
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------------------------------------------------------------------------
Davis J McCarthy
Research Technician
Bioinformatics Division
Walter and Eliza Hall Institute of Medical Research
1G Royal Parade, Parkville, Vic 3052, Australia
dmccarthy at wehi.edu.au
http://www.wehi.edu.au



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