September 2010 Archives by thread

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Starting: Wed Sep 1 05:43:08 CEST 2010
Ending: Thu Sep 30 23:36:16 CEST 2010
Messages: 469

• [BioC] revisiting genomic coordinates to gene   Andrew Yee
  • [BioC] revisiting genomic coordinates to gene   Vincent Carey
    • [BioC] revisiting genomic coordinates to gene   Andrew Yee
• [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db   Alanne, Mervi
  • [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db   Sean Davis
  • [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db   Steve Lianoglou
  • [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db   Marc Carlson
• [BioC] boxplot expressionset   David martin
  • [BioC] boxplot expressionset   axel.klenk at actelion.com
    • [BioC] boxplot expressionset   David martin
      • [BioC] boxplot expressionset   axel.klenk at actelion.com
• [BioC] Subscripting GenomicRanges objects with [[ or $   Tim Yates
  • [BioC] Subscripting GenomicRanges objects with [[ or $   Michael Lawrence
    • [BioC] Subscripting GenomicRanges objects with [[ or $   Patrick Aboyoun
      • [BioC] Subscripting GenomicRanges objects with [[ or $   Michael Lawrence
      • [BioC] Subscripting GenomicRanges objects with [[ or $   Tim Yates
      • [BioC] Subscripting GenomicRanges objects with [[ or $   Michael Lawrence
• [BioC] Limma: topTable without eBayes?   Gordon K Smyth
  • [BioC] Limma: topTable without eBayes?   Hooiveld, Guido
    • [BioC] Limma: topTable without eBayes?   Gordon K Smyth
• [BioC] How to get all qualified GEO Platform records in R   Yuan Hao
  • [BioC] How to get all qualified GEO Platform records in R   Sean Davis
• [BioC] Using linear models to find differential gene expression (NGS)   Johnny H
  • [BioC] Using linear models to find differential gene expression (NGS)   Kasper Daniel Hansen
  • [BioC] Using linear models to find differential gene expression (NGS)   Naomi Altman
  • [BioC] Using linear models to find differential gene expression (NGS)   Simon Anders
    • [BioC] Using linear models to find differential gene expression (NGS)   Johnny H
• [BioC] HTqPCR   David martin
  • [BioC] HTqPCR   Shi, Tao
• [BioC] Machine learning, cross validation and gene selection   Daniel Brewer
  • [BioC] Machine learning, cross validation and gene selection   Vincent Carey
    • [BioC] Machine learning, cross validation and gene selection   Daniel Brewer
      • [BioC] Machine learning, cross validation and gene selection   Steve Lianoglou
• [BioC] Limma script - Opinions requested   Orfe, Lisa
• [BioC] Bioinformatician/Software Engineer position available at Umass Medical School   Zhu, Julie
• [BioC] question regarding removing probes/probe sets before normalization   Jack Luo
  • [BioC] question regarding removing probes/probe sets before normalization   Jenny Drnevich
    • [BioC] question regarding removing probes/probe sets before normalization   Jack Luo
      • [BioC] question regarding removing probes/probe sets before normalization   Jenny Drnevich
      • [BioC] question regarding removing probes/probe sets before normalization   Jack Luo
      • [BioC] question regarding removing probes/probe sets before normalization   Jenny Drnevich
      • [BioC] question regarding removing probes/probe sets before normalization   Jack Luo
      • [BioC] question regarding removing probes/probe sets before normalization   Jenny Drnevich
• [BioC] help with Agilent microarrays   Alberto Goldoni
  • [BioC] help with Agilent microarrays   axel.klenk at actelion.com
    • [BioC] help with Agilent microarrays   Alberto Goldoni
      • [BioC] help with Agilent microarrays   axel.klenk at actelion.com
      • [BioC] help with Agilent microarrays   Alberto Goldoni
      • [BioC] help with Agilent microarrays   axel.klenk at actelion.com
• [BioC] AgiMicroRna rmaMicriRna call fails   Thomas Hampton
  • [BioC] AgiMicroRna rmaMicriRna call fails   Richard Friedman
• [BioC] Using linear models to find differential gene expression (NGS)   Thomas J Hardcastle
• [BioC] gcrma vs rma   Lucia
  • [BioC] gcrma vs rma   Zhijin Wu
• [BioC] Celegans.db_2.3.5: Wormbase version   Zhu, Julie
  • [BioC] Celegans.db_2.3.5: Wormbase version   Marc Carlson
    • [BioC] Celegans.db_2.3.5: Wormbase version   Zhu, Julie
• [BioC] Data Normalization for Exiqon   ashwin Vishnuvardhana
• [BioC] ChIPpeakAnno - VennDiagram P-value - NaN   Zhu, Julie
  • [BioC] ChIPpeakAnno -findOverlappingPeaks   Zhu, Julie
    • [BioC] ChIPpeakAnno -findOverlappingPeaks   Khademul Islam
• [BioC] int.geneint.db package installation   Tim Smith
  • [BioC] int.geneint.db package installation   Heidi Dvinge
    • [BioC] int.geneint.db package installation   Tim Smith
• [BioC] about illumina data   zhliu.tju
  • [BioC] about illumina data   Vincent Carey
• [BioC] about illumina data   zhliu.tju
• [BioC] out of memory problem installing gdata on linux   Ross Chapman
  • [BioC] out of memory problem installing gdata on linux   Steve Lianoglou
    • [BioC] out of memory problem installing gdata on linux   Ross Chapman
      • [BioC] out of memory problem installing gdata on linux   Sean Davis
      • [BioC] out of memory problem installing gdata on linux   Ross Chapman
• [BioC] BioMart error   René Dreos
  • [BioC] BioMart error   Hans-Rudolf Hotz
    • [BioC] BioMart error   René Dreos
• [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's   Steve Lianoglou
  • [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's   Robert M. Flight
    • [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's   Steve Lianoglou
      • [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's   Marc Carlson
      • [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's   Steve Lianoglou
• [BioC] Drawing multiple sequence logos with seqLogo?   Nenad Bartonicek
  • [BioC] Drawing multiple sequence logos with seqLogo?   Wolfgang Huber
    • [BioC] Drawing multiple sequence logos with seqLogo?   Wolfgang Huber
• [BioC] how to create a TranscriptDb object from bed file   Ann Loraine
• [BioC] Coverage vs GC bias - how to?   Marc Noguera
  • [BioC] Coverage vs GC bias - how to?   Steve Lianoglou
  • [BioC] Coverage vs GC bias - how to?   Harris A. Jaffee
• [BioC] qaProcess.marginevents subscript out of bounds   drambald
• [BioC] GenomicRanges countOverlaps error   Suraj Menon
  • [BioC] GenomicRanges countOverlaps error   Steve Lianoglou
    • [BioC] GenomicRanges countOverlaps error   Suraj Menon
• [BioC] DNA-Methylation, CopyNumber Results   Ina Hoeschele
  • [BioC] sorry, I sent the earlier incomplete email by mistake   Ina Hoeschele
    • [BioC] Dye bias adjustment of Illumina Infinium Methylation data   Pan Du
      • [BioC] Dye bias adjustment of Illumina Infinium Methylation data   Shi, Tao
      • [BioC] Dye bias adjustment of Illumina Infinium Methylation data   Pan Du
      • [BioC] Dye bias adjustment of Illumina Infinium Methylation data   Shi, Tao
      • [BioC] Dye bias adjustment of Illumina Infinium Methylation data   Philip Lijnzaad
      • [BioC] Dye bias adjustment of Illumina Infinium Methylation data   Shi, Tao
• [BioC] tilingArray getting started questions   Noah Dowell
• [BioC] tilingArray getting started questions   Noah Dowell
• [BioC] Map the enriched chromosome bands to entrez genes   Xi Zhao
  • [BioC] Map the enriched chromosome bands to entrez genes   Wolfgang Huber
    • [BioC] Map the enriched chromosome bands to entrez genes   Xi Zhao
      • [BioC] Map the enriched chromosome bands to entrez genes   Wolfgang Huber
• [BioC] rtracklayer interface to GBrowse   Kishor Tappita
  • [BioC] rtracklayer interface to GBrowse   Michael Lawrence
• [BioC] Drawing multiple sequence logos with seqLogo?   Nenad Bartonicek
• [BioC] aCGH...'Genomic events'   BTIS Department
  • [BioC] aCGH...'Genomic events'   Sean Davis
• [BioC] Lumi: problems reading a GenomStudio file   Østensen, Ingrid Helen Garmann
• [BioC] help with fit function   Alberto Goldoni
  • [BioC] help with fit function   James W. MacDonald
• [BioC] Postdoctoral Position in Statistical analysis of omics data applied to immunology   Audrey Kauffmann
• [BioC] mouse SNPs   Glazko, Galina
  • [BioC] mouse SNPs   Vincent Carey
  • [BioC] mouse SNPs   Zhu, Julie
• [BioC] probeAnno for tilingArray package.   sohkhan at notes.cc.sunysb.edu
  • [BioC] probeAnno for tilingArray package.   Wolfgang Huber
    • [BioC] probeAnno for tilingArray package.   sohkhan at notes.cc.sunysb.edu
• [BioC] Sorry! I made an error in my last email!   Sam L. Carl
• [BioC] pa.calls-function in package "panp"   Samuel Wuest
• [BioC] Bootstrapping paired samples and tiny groups   Benjamin Otto
  • [BioC] Bootstrapping paired samples and tiny groups   Naomi Altman
• [BioC] questions concerning quantile normalization in HTqPCR   Andreia Fonseca
  • [BioC] questions concerning quantile normalization in HTqPCR   Heidi Dvinge
    • [BioC] questions concerning quantile normalization in HTqPCR   Andreia Fonseca
• [BioC] COURSE: R and Bioconductor courses at Imperial College London   North, Bernard V
• [BioC] mouse SNPs   Glazko, Galina
  • [BioC] mouse SNPs annotation with ChIPpeakAnno   Zhu, Julie
    • [BioC] mouse SNPs annotation with ChIPpeakAnno   Glazko, Galina
      • [BioC] mouse SNPs annotation with ChIPpeakAnno   Steffen Durinck
      • [BioC] mouse SNPs annotation with ChIPpeakAnno   Glazko, Galina
      • [BioC] mouse SNPs annotation with ChIPpeakAnno   Zhu, Julie
• [BioC] pa.calls-function in package "panp"   Fong Chun Chan
• [BioC] problem with using mclapply and org.Hs.eg.db   Andrew Yee
  • [BioC] problem with using mclapply and org.Hs.eg.db   Martin Morgan
    • [BioC] problem with using mclapply and org.Hs.eg.db   Andrew Yee
• [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data   xiangxue Guo
  • [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data   Michael Imbeault
    • [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data   James W. MacDonald
      • [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data   Martin Morgan
• [BioC] normalization usinf the delta Ct method   Andreia Fonseca
  • [BioC] normalization usinf the delta Ct method   Wolfgang Huber
• [BioC] Analysing expression with tiling arrays   January Weiner
  • [BioC] Analysing expression with tiling arrays   Wolfgang Huber
    • [BioC] Analysing expression with tiling arrays   January Weiner
• [BioC] Analysing expression with tiling arrays   January Weiner
  • [BioC] Analysing expression with tiling arrays   Edwin Groot
• [BioC] Quality control on Human Affymetrix Exon microarrays   B.Misovic at lumc.nl
  • [BioC] Quality control on Human Affymetrix Exon microarrays   cstrato
• [BioC] Calculation of t-tests for factorial design   Pascal Gellert
  • [BioC] Calculation of t-tests for factorial design   James W. MacDonald
• [BioC] Error in GenomicRanges trying to append two GRangesLists   Elizabeth Purdom
  • [BioC] Error in GenomicRanges trying to append two GRangesLists   Martin Morgan
• [BioC] Combining data from runs   Supriya Munshaw
  • [BioC] Combining data from runs   Wolfgang Huber
  • [BioC] Combining data from runs   Michal Okoniewski
• [BioC] topGO in combination with Agilent arrays   De Boever Patrick
  • [BioC] topGO in combination with Agilent arrays   James W. MacDonald
• [BioC] Agilent probenames and biomaRt   De Boever Patrick
  • [BioC] Agilent probenames and biomaRt   James W. MacDonald
• [BioC] edgeR maPlot - plotting group means?   Iddo Ben-Dov
  • [BioC] edgeR maPlot - plotting group means?   Mark Robinson
• [BioC] Genecards v3 access   Daniel Brewer
  • [BioC] Genecards v3 access   Sean Davis
    • [BioC] Genecards v3 access   Marc Carlson
• [BioC] some random comments on GRanges   Kasper Daniel Hansen
  • [BioC] some random comments on GRanges   Michael Lawrence
  • [BioC] some random comments on GRanges   Michael Lawrence
    • [BioC] some random comments on GRanges   Martin Morgan
• [BioC] gcrma hugene10st array   Andrew Einhorn
  • [BioC] gcrma hugene10st array   Zhijin Wu
• [BioC] FlowCore/FlowViz issues   Roger Leigh
  • [BioC] FlowCore/FlowViz issues   Nishant Gopalakrishnan
• [BioC] histogram   Andrew Einhorn
  • [BioC] histogram   Wolfgang Huber
• [BioC] Bioconductor.org to be down Tuesday 14 September   Dan Tenenbaum
• [BioC] PICS mm9 mappability map?   Hamid Bolouri
• [BioC] agilent shRNA library   Giusy Della Gatta
• [BioC] SPIA - changes between 1.4.0 and 1.60.   Lavinia Gordon
  • [BioC] SPIA - changes between 1.4.0 and 1.60.   Sorin Draghici
• [BioC] SPIA - changes between 1.4.0 and 1.60.   Lavinia Gordon
  • [BioC] SPIA - changes between 1.4.0 and 1.60.   Sorin Draghici
• [BioC] SPIA - changes between 1.4.0 and 1.60.   Lavinia Gordon
• [BioC] probeAnno for tilingArray package.   Noah Dowell
• [BioC] How is fold change reported in the samr output?   brian snail
  • [BioC] How is fold change reported in the samr output?   James W. MacDonald
    • [BioC] How is fold change reported in the samr output?   Johnny H
      • [BioC] How is fold change reported in the samr output?   James W. MacDonald
      • [BioC] How is fold change reported in the samr output?   brian snail
• [BioC] how to do time course data analysis of smd format?   Budhayash Gautam
  • [BioC] how to do time course data analysis of smd format?   FengMing Hsu
• [BioC] Gating with an ellipsoidGate   Josef Spidlen
  • [BioC] Gating with an ellipsoidGate   Roger Leigh
    • [BioC] Gating with an ellipsoidGate   Roger Leigh
      • [BioC] Gating with an ellipsoidGate   Josef Spidlen
• [BioC] crlmm and cluster centres error   Ricardo Vidal
  • [BioC] crlmm and cluster centres error   Benilton Carvalho
    • [BioC] crlmm and cluster centres error   Ricardo Vidal
      • [BioC] crlmm and cluster centres error   Ricardo Vidal
• [BioC] question regarding ALU sequence   Jack Luo
• [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)   Elizabeth Purdom
  • [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)   Sean Davis
    • [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)   Elizabeth Purdom
      • [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)   Vincent Carey
      • [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)   Sean Davis
• [BioC] squaring each element of an expression set   Andrew Einhorn
  • [BioC] squaring each element of an expression set   axel.klenk at actelion.com
• [BioC] Querying clustering in heatmap.2   Elizabeth Ashley
  • [BioC] Querying clustering in heatmap.2   Steve Lianoglou
    • [BioC] Querying clustering in heatmap.2   Elizabeth Ashley
• [BioC] probeAnno for tilingArray package.   Wolfgang Huber
• [BioC] Comparing 2 GEO datasets   Yogesh
  • [BioC] Comparing 2 GEO datasets   Sean Davis
    • [BioC] Comparing 2 GEO datasets   Yogesh
      • [BioC] Comparing 2 GEO datasets   Sean Davis
      • [BioC] Comparing 2 GEO datasets   Yogesh
• [BioC] Oligo package crlmm method   Zhu, Julie
  • [BioC] Oligo package crlmm method   Benilton Carvalho
    • [BioC] Oligo package crlmm method   Zhu, Julie
      • [BioC] Oligo package crlmm method   Zhu, Julie
• [BioC] Agi4x44PreProcess- RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)   Brown, Joseph
• [BioC] BioNet - interpretation of node score   Eva Benito Garagorri
• [BioC] e-LICO multi-omics prediction challenge with background knowledge on Obstructive Nephropathy   Adam Woznica
• [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   Sunny Srivastava
  • [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   January Weiner
    • [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   Sunny Srivastava
  • [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   Wolfgang Huber
    • [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   Sunny Srivastava
      • [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   Sean Davis
      • [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function   Sunny Srivastava
• [BioC] about ChIPpeakAnno   Zhu, Julie
• [BioC] Images from exon arrays   Popovic, Jelena
  • [BioC] Images from exon arrays   Henrik Bengtsson
• [BioC] R/Bioc workshops at UC Riverside   Thomas Girke
  • [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside   Neel Aluru
    • [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside   Thomas Girke
      • [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside   Neel Aluru
      • [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside   Dan Tenenbaum
• [BioC] about ChIPpeakAnno   Zhu, Julie
• [BioC] about illumina data   Vincent Carey
  • [BioC] about illumina data   zhliu.tju
• [BioC] about ChIPpeakAnno   Zhu, Julie
• [BioC] pd.mapping250k.sty package: featureSet:fragment_length   Zhu, Julie
  • [BioC] pd.mapping250k.sty package: featureSet:fragment_length   James W. MacDonald
    • [BioC] pd.mapping250k.sty package: featureSet:fragment_length   Zhu, Julie
• [BioC] How do I get ILMN_nnnn ids?   James Carman
• [BioC] HTqPCR plotCtRep only accepts 2 replicates   Kee Wong
  • [BioC] HTqPCR plotCtRep only accepts 2 replicates   Heidi Dvinge
    • [BioC] HTqPCR plotCtRep only accepts 2 replicates   Kee Wong
      • [BioC] HTqPCR plotCtRep only accepts 2 replicates   Heidi Dvinge
      • [BioC] HTqPCR plotCtRep only accepts 2 replicates   Kee Wong
• [BioC] Deadline for submitting a package for BioC 2.7   Hervé Pagès
• [BioC] about ChIPpeakAnno   Zhu, Julie
• [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Harry Mangalam
• [BioC] BAF and logR for Affymetrix SNP-arrays   Alla Bulashevska
  • [BioC] BAF and logR for Affymetrix SNP-arrays   Henrik Bengtsson
• [BioC] help with normalization   Casper Shyr
  • [BioC] help with normalization   Richard Friedman
• [BioC] how to get the statistics of wilcoxon signed-rank test for the detection call of the MAS5 algorithm?   Jack Luo
  • [BioC] how to get the statistics of wilcoxon signed-rank test for the detection call of the MAS5 algorithm?   James W. MacDonald
• [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Harry Mangalam
  • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   James W. MacDonald
    • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Harry Mangalam
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   James W. MacDonald
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Marc Carlson
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   James W. MacDonald
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Martin Morgan
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   James W. MacDonald
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Harry Mangalam
      • [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?   Marc Carlson
• [BioC] Question on copy number estimation for Affymetrix SNP array 100k and 500k   Zhu, Julie
  • [BioC] Question on copy number estimation for Affymetrix SNP array 100k and 500k   Henrik Bengtsson
    • [BioC] Question on copy number estimation for Affymetrix SNP array 100k and 500k   Zhu, Julie
• [BioC] Setting up model for time course analysis   Casper Shyr
  • [BioC] Setting up model for time course analysis   Heidi Dvinge
• [BioC] AgiMicroRna problems   Mark Cowley
  • [BioC] AgiMicroRna problems   Mark Cowley
    • [BioC] How to perform differential expression analysis on a pre-normalized dataset?   Karthi Sivaraman
      • [BioC] How to perform differential expression analysis on a pre-normalized dataset?   James W. MacDonald
      • [BioC] How to perform differential expression analysis on a pre-normalized dataset?   Karthi Sivaraman
    • [BioC] AgiMicroRna problems   David Ruau
      • [BioC] AgiMicroRna problems   Mark Cowley
      • [BioC] AgiMicroRna problems   Segal, Corrinne
      • [BioC] AgiMicroRna problems   Mark Cowley
• [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays   Pascal Gellert
  • [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays   Mark Cowley
  • [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays   cstrato
    • [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays   Pascal Gellert
      • [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays   Michael Imbeault
• [BioC] qPCR Event Calendar - autumn/winter 2010   qPCR Event Calendar
• [BioC] Hg18 build of org.Hs.eg.db   Andrew Yee
  • [BioC] Hg18 build of org.Hs.eg.db   Vincent Carey
    • [BioC] Hg18 build of org.Hs.eg.db   Steve Lianoglou
      • [BioC] Hg18 build of org.Hs.eg.db   Vincent Carey
      • [BioC] Hg18 build of org.Hs.eg.db   Sean Davis
      • [BioC] Hg18 build of org.Hs.eg.db   Marc Carlson
• [BioC] simulated array data   Hooiveld, Guido
  • [BioC] simulated array data   Maarten van Iterson
• [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   James Carman
• [BioC] error in plotKEGGGraph   Pierre Neuvial
  • [BioC] error in plotKEGGGraph   Jitao David Zhang
    • [BioC] error in plotKEGGGraph   Pierre Neuvial
• [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   Matthew Ritchie
  • [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   James Carman
    • [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   Matthew Ritchie
      • [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   James Carman
      • [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   Matthew Ritchie
      • [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   James Carman
      • [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   Mark Dunning
• [BioC] about ChIPpeakAnno   Zhu, Julie
• [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...   James Carman
• [BioC] error in plotKEGGGraph   Jitao David Zhang
• [BioC] curvHDR   drambald
  • [BioC] curvHDR   Heidi Dvinge
• [BioC] Sources of information about amplified genes in cancer   Daniel Brewer
• [BioC] MeDIP-chip data analysis.   Jinyan Huang
• [BioC] fastq upload time   Daniel.Berner at unibas.ch
  • [BioC] fastq upload time   Sean Davis
    • [BioC] fastq upload time   Alex Gutteridge
      • [BioC] fastq upload time   Daniel.Berner at unibas.ch
      • [BioC] fastq upload time   Marc Noguera
• [BioC] ChIPpeakAnno -findOverlappingPeaks   Zhu, Julie
• [BioC] Package "xps" "import.expr.scheme" problem   Naïma Oumouhou
  • [BioC] Package "xps" "import.expr.scheme" problem   cstrato
    • [BioC] Package "xps" "import.expr.scheme" problem   Naïma Oumouhou
      • [BioC] Package "xps" "import.expr.scheme" problem   cstrato
      • [BioC] Package "xps" "import.expr.scheme" problem   Naïma Oumouhou
• [BioC] Position for a Computational Biologist/Geneticist, Plant Sciences, Cambridge, UK   Krys Kelly
• [BioC] When will illuminaHumanv4BeadID.db package be available?   Asta Laiho
  • [BioC] When will illuminaHumanv4BeadID.db package be available?   Mark Dunning
• [BioC] Difficulties with tileHMM's gff output   Rayna
  • [BioC] Difficulties with tileHMM's gff output   Martin Morgan
  • [BioC] Difficulties with tileHMM's gff output   Peter Humburg
    • [BioC] Difficulties with tileHMM's gff output   Rayna
      • [BioC] Difficulties with tileHMM's gff output   Peter Humburg
• [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Paul Geeleher
  • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Steve Lianoglou
    • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Paul Geeleher
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Steve Lianoglou
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Paul Geeleher
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Simon Anders
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Martin Morgan
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Kasper Daniel Hansen
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Paul Geeleher
      • [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.   Martin Morgan
• [BioC] Normalization questions   ANJAN PURKAYASTHA
  • [BioC] Normalization questions   Sean Davis
    • [BioC] Normalization questions   Kevin R. Coombes
      • [BioC] Normalization questions   Sean Davis
  • [BioC] Normalization questions   Wolfgang Huber
• [BioC] flowStats quadrantGate and 'names'   Aric Gregson
  • [BioC] flowStats quadrantGate and 'names'   Nishant Gopalakrishnan
    • [BioC] flowStats quadrantGate and 'names'   Aric Gregson
• [BioC] question regarding differential expression   Jack Luo
  • [BioC] question regarding differential expression   Sean Davis
    • [BioC] question regarding differential expression   Jack Luo
  • [BioC] question regarding differential expression   Sunny Srivastava
    • [BioC] question regarding differential expression   Jack Luo
      • [BioC] question regarding differential expression   Sunny Srivastava
      • [BioC] question regarding differential expression   Jack Luo
  • [BioC] question regarding differential expression   James W. MacDonald
    • [BioC] question regarding differential expression   Jack Luo
      • [BioC] question regarding differential expression   Sean Davis
      • [BioC] question regarding differential expression   Ina Hoeschele
• [BioC] Problem with genomicFeatures: id2name   Paul Leo
  • [BioC] Problem with genomicFeatures: id2name   Marc Carlson
• [BioC] IRanges: Need help speeding up sliding window analysis   Michael Dondrup
  • [BioC] IRanges: Need help speeding up sliding window analysis   Martin Morgan
    • [BioC] IRanges: Need help speeding up sliding window analysis   Patrick Aboyoun
      • [BioC] IRanges: Need help speeding up sliding window analysis   Michael Dondrup
• [BioC] unusual behavior when concatenating DNAStringSets   Andrew Yee
  • [BioC] unusual behavior when concatenating DNAStringSets   Martin Morgan
• [BioC] PlateCore questions   Sancho, Jose
  • [BioC] PlateCore questions   Errol Strain
• [BioC] Package "xps" "import.expr.scheme" problem   cstrato
• [BioC] Puzzled about limma and PAM results validity   Giulio Di Giovanni
  • [BioC] Puzzled about limma and PAM results validity   Giulio Di Giovanni
    • [BioC] Puzzled about limma and PAM results validity   Steve Lianoglou
      • [BioC] Puzzled about limma and PAM results validity   Steve Lianoglou
• [BioC] Quantile normalization in Ringo package   Mohamed Lajnef
  • [BioC] Quantile normalization in Ringo package   Noah Dowell
  • [BioC] Quantile normalization in Ringo package   Joern Toedling
• [BioC] snpMatrix: read.plink() allocMatrix: too many elements specified   Jim Moon
  • [BioC] snpMatrix: read.plink() allocMatrix: too many elements specified   Vincent Carey
  • [BioC] snpMatrix: read.plink() allocMatrix: too many elements specified   Benilton Carvalho
• [BioC] Images from exon arrays   Popovic, Jelena
  • [BioC] Images from exon arrays   Henrik Bengtsson
• [BioC] unbalanced block design using limma   Juan Lin
• [BioC] lmFit- ls vs robust help   Casper Shyr
• [BioC] ShortRead for sequencing data quality assessment   heyi xiao
  • [BioC] ShortRead for sequencing data quality assessment   Valerie Obenchain
    • [BioC] ShortRead for sequencing data quality assessment   Valerie Obenchain
• [BioC] Question about topTable   Casper Shyr
  • [BioC] Question about topTable   Mark Cowley
• [BioC] BioNet - interpretation of node score (Eva Benito Garagorri)   Daniela Beißer
• [BioC] ShortRead for sequencing data quality assessment   heyi xiao
  • [BioC] ShortRead for sequencing data quality assessment   Valerie Obenchain
• [BioC] Help on extracting up-regulated genes with limma‏   Victoria Hu
  • [BioC] Help on extracting up-regulated genes with limma‏   Sean Davis
• [BioC] goTools question   Pete Shepard
• [BioC] unbalanced block design using limma   Gordon K Smyth
• [BioC] install error in GeneRfold   Yuan Jian
  • [BioC] install error in GeneRfold   Heidi Dvinge
• [BioC] Question: How does limma derives its logFC value in two colored arrays?   Sunny Srivastava
• [BioC] how to save the expression values for two color data after normalization   Budhayash Gautam
  • [BioC] how to save the expression values for two color data after normalization   Steve Lianoglou
    • [BioC] how to save the expression values for two color data after normalization   Mark Cowley
  • [BioC] how to save the expression values for two color data after normalization   Budhayash Gautam
• [BioC] Right skewed histogram of p-values   Giulio Di Giovanni
  • [BioC] Right skewed histogram of p-values   Simon Anders
• [BioC] Agi4x44PreProcess   Neel Aluru
• [BioC] applying p.adjust() in limma   Xiaokuan Wei
  • [BioC] applying p.adjust() in limma   Sean Davis
    • [BioC] applying p.adjust() in limma   Xiaokuan Wei
  • [BioC] applying p.adjust() in limma   Sunny Srivastava
    • [BioC] applying p.adjust() in limma   Xiaokuan Wei
• [BioC] PM values for probes in a probeset: background corrected and normalized, but not summarized?   Glazko, Galina
  • [BioC] PM values for probes in a probeset: background corrected and normalized, but not summarized?   James W. MacDonald
    • [BioC] PM values for probes in a probeset: background corrected and normalized, but not summarized?   Glazko, Galina
• [BioC] Simpleaffy problems   ANJAN PURKAYASTHA
  • [BioC] Simpleaffy problems   James W. MacDonald
• [BioC] Question: How does limma derives its logFC value in two colored arrays?   Gordon K Smyth
  • [BioC] Question: How does limma derives its logFC value in two colored arrays?   Sunny Srivastava
• [BioC] Simulation of the beta average   Samor Gandhi
  • [BioC] Simulation of the beta average   Sean Davis
    • [BioC] Simulation of the beta average   Samor Gandhi
      • [BioC] Simulation of the beta average   Sean Davis
      • [BioC] Simulation of the beta average   Samor Gandhi
      • [BioC] Simulation of the beta average   Tim Triche
      • [BioC] Simulation of the beta average   Samor Gandhi
      • [BioC] Simulation of the beta average   Shi, Tao
• [BioC] Feedback on Affymetrix background adjustment   ANJAN PURKAYASTHA
  • [BioC] Feedback on Affymetrix background adjustment   James W. MacDonald
• [BioC] Help Handling potential siRNA off target effects   Lloyd, Bryony
  • [BioC] Help Handling potential siRNA off target effects   Wolfgang Huber
• [BioC] Flagging overlapping gene exons (was Re: Question about CSAMA10 ...)   Steve Lianoglou
• [BioC] how to save the expression values for two color data after normalization   Maciej Jończyk
• [BioC] exonmap/xmapcore and splicing.index   Peter Saffrey
  • [BioC] exonmap/xmapcore and splicing.index   Michal Okoniewski
• [BioC] reading data from Beadarray into R   Hajar Hassani Lahsinoui
  • [BioC] reading data from Beadarray into R   Steve Lianoglou
• [BioC] reading data from Beadarray into R   Steve Lianoglou
  • [BioC] reading data from Beadarray into R   Hajar Hassani Lahsinoui
    • [BioC] reading data from Beadarray into R   Steve Lianoglou
      • [BioC] reading data from Beadarray into R   Hajar Hassani Lahsinoui
      • [BioC] reading data from Beadarray into R   Jenny Drnevich
      • [BioC] reading data from Beadarray into R   Hajar Hassani Lahsinoui
      • [BioC] reading data from Beadarray into R   Jenny Drnevich
      • [BioC] reading data from Beadarray into R   Hajar Hassani Lahsinoui
      • [BioC] reading data from Beadarray into R   Steve Lianoglou
      • [BioC] reading data from Beadarray into R   Martin Morgan
      • [BioC] reading data from Beadarray into R   Matthew Ritchie
      • [BioC] reading data from Beadarray into R   Hajar Hassani Lahsinoui
      • [BioC] reading data from Beadarray into R   Steve Lianoglou
• [BioC] Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value   Steve Lianoglou
  • [BioC] Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value   Martin Morgan
• [BioC] Illumina Methylation data   zhiqun tang
  • [BioC] Illumina Methylation data   Tim Triche
• [BioC] how to give input to geneAnswer   Budhayash Gautam
  • [BioC] how to give input to geneAnswer   Steve Lianoglou
    • [BioC] how to give input to geneAnswer   Gilbert Feng
• [BioC] Limma: nestedF and interaction term   MassimoAcquaviva at ospedale-gaslini.ge.it
  • [BioC] Limma: nestedF and interaction term   James W. MacDonald
• [BioC] Illumina Methylation data   Pan Du
• [BioC] yet another gene universe question   Max Kuhn
• [BioC] Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'   Paul Shannon
  • [BioC] Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'   Dan Tenenbaum

Last message date: Thu Sep 30 23:36:16 CEST 2010
Archived on: Thu Sep 30 23:36:28 CEST 2010

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