[BioC] HTqPCR plotCtRep only accepts 2 replicates
Heidi Dvinge
heidi at ebi.ac.uk
Fri Sep 17 19:09:45 CEST 2010
Hello Kee,
> Dear list members,
>
> Does anyone know if there are any functions like plotCtRep that can take
> more than two technical replicates and look at the SD of the reps?
>
There currently isn't any function in HTqPCR for doing that - mainly since
I've only worked with qPCR plates with max 2 replicates myself.
However, I've been toying with the idea of adding something like a plot of
mean (or median) versus standard deviation. Or perhaps just something like
a boxplot of standard deviations within each plate. Would that be useful,
or was it something else you had in mind?
Cheers
\Heidi
> Best,
>
> Kee Wong
>
>
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>
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