September 2010 Archives by date
Starting: Wed Sep 1 05:43:08 CEST 2010
Ending: Thu Sep 30 23:36:16 CEST 2010
Messages: 469
- [BioC] revisiting genomic coordinates to gene
Andrew Yee
- [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db
Alanne, Mervi
- [BioC] revisiting genomic coordinates to gene
Vincent Carey
- [BioC] boxplot expressionset
David martin
- [BioC] boxplot expressionset
axel.klenk at actelion.com
- [BioC] boxplot expressionset
David martin
- [BioC] Subscripting GenomicRanges objects with [[ or $
Tim Yates
- [BioC] Limma: topTable without eBayes?
Gordon K Smyth
- [BioC] Limma: topTable without eBayes?
Hooiveld, Guido
- [BioC] boxplot expressionset
axel.klenk at actelion.com
- [BioC] How to get all qualified GEO Platform records in R
Yuan Hao
- [BioC] How to get all qualified GEO Platform records in R
Sean Davis
- [BioC] Using linear models to find differential gene expression (NGS)
Johnny H
- [BioC] Using linear models to find differential gene expression (NGS)
Kasper Daniel Hansen
- [BioC] Using linear models to find differential gene expression (NGS)
Naomi Altman
- [BioC] Subscripting GenomicRanges objects with [[ or $
Michael Lawrence
- [BioC] HTqPCR
David martin
- [BioC] revisiting genomic coordinates to gene
Andrew Yee
- [BioC] Using linear models to find differential gene expression (NGS)
Simon Anders
- [BioC] Machine learning, cross validation and gene selection
Daniel Brewer
- [BioC] Limma script - Opinions requested
Orfe, Lisa
- [BioC] Machine learning, cross validation and gene selection
Vincent Carey
- [BioC] Bioinformatician/Software Engineer position available at Umass Medical School
Zhu, Julie
- [BioC] Machine learning, cross validation and gene selection
Daniel Brewer
- [BioC] Subscripting GenomicRanges objects with [[ or $
Patrick Aboyoun
- [BioC] Machine learning, cross validation and gene selection
Steve Lianoglou
- [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db
Sean Davis
- [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db
Steve Lianoglou
- [BioC] old version of Bioconductor package/annotation library lumiHumanAll.db
Marc Carlson
- [BioC] question regarding removing probes/probe sets before normalization
Jack Luo
- [BioC] question regarding removing probes/probe sets before normalization
Jenny Drnevich
- [BioC] Limma: topTable without eBayes?
Gordon K Smyth
- [BioC] Using linear models to find differential gene expression (NGS)
Johnny H
- [BioC] help with Agilent microarrays
Alberto Goldoni
- [BioC] question regarding removing probes/probe sets before normalization
Jack Luo
- [BioC] question regarding removing probes/probe sets before normalization
Jenny Drnevich
- [BioC] help with Agilent microarrays
axel.klenk at actelion.com
- [BioC] AgiMicroRna rmaMicriRna call fails
Thomas Hampton
- [BioC] Using linear models to find differential gene expression (NGS)
Thomas J Hardcastle
- [BioC] help with Agilent microarrays
Alberto Goldoni
- [BioC] help with Agilent microarrays
axel.klenk at actelion.com
- [BioC] question regarding removing probes/probe sets before normalization
Jack Luo
- [BioC] AgiMicroRna rmaMicriRna call fails
Richard Friedman
- [BioC] question regarding removing probes/probe sets before normalization
Jenny Drnevich
- [BioC] help with Agilent microarrays
Alberto Goldoni
- [BioC] gcrma vs rma
Lucia
- [BioC] gcrma vs rma
Zhijin Wu
- [BioC] question regarding removing probes/probe sets before normalization
Jack Luo
- [BioC] Subscripting GenomicRanges objects with [[ or $
Michael Lawrence
- [BioC] question regarding removing probes/probe sets before normalization
Jenny Drnevich
- [BioC] Celegans.db_2.3.5: Wormbase version
Zhu, Julie
- [BioC] Celegans.db_2.3.5: Wormbase version
Marc Carlson
- [BioC] HTqPCR
Shi, Tao
- [BioC] Celegans.db_2.3.5: Wormbase version
Zhu, Julie
- [BioC] help with Agilent microarrays
axel.klenk at actelion.com
- [BioC] Subscripting GenomicRanges objects with [[ or $
Tim Yates
- [BioC] Subscripting GenomicRanges objects with [[ or $
Michael Lawrence
- [BioC] Data Normalization for Exiqon
ashwin Vishnuvardhana
- [BioC] ChIPpeakAnno - VennDiagram P-value - NaN
Zhu, Julie
- [BioC] int.geneint.db package installation
Tim Smith
- [BioC] int.geneint.db package installation
Heidi Dvinge
- [BioC] int.geneint.db package installation
Tim Smith
- [BioC] about illumina data
zhliu.tju
- [BioC] about illumina data
zhliu.tju
- [BioC] out of memory problem installing gdata on linux
Ross Chapman
- [BioC] ChIPpeakAnno -findOverlappingPeaks
Zhu, Julie
- [BioC] out of memory problem installing gdata on linux
Steve Lianoglou
- [BioC] BioMart error
René Dreos
- [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's
Steve Lianoglou
- [BioC] BioMart error
Hans-Rudolf Hotz
- [BioC] BioMart error
René Dreos
- [BioC] Drawing multiple sequence logos with seqLogo?
Nenad Bartonicek
- [BioC] out of memory problem installing gdata on linux
Ross Chapman
- [BioC] out of memory problem installing gdata on linux
Sean Davis
- [BioC] out of memory problem installing gdata on linux
Ross Chapman
- [BioC] how to create a TranscriptDb object from bed file
Ann Loraine
- [BioC] Coverage vs GC bias - how to?
Marc Noguera
- [BioC] qaProcess.marginevents subscript out of bounds
drambald
- [BioC] GenomicRanges countOverlaps error
Suraj Menon
- [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's
Robert M. Flight
- [BioC] DNA-Methylation, CopyNumber Results
Ina Hoeschele
- [BioC] Drawing multiple sequence logos with seqLogo?
Wolfgang Huber
- [BioC] about illumina data
Vincent Carey
- [BioC] tilingArray getting started questions
Noah Dowell
- [BioC] sorry, I sent the earlier incomplete email by mistake
Ina Hoeschele
- [BioC] Dye bias adjustment of Illumina Infinium Methylation data
Pan Du
- [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's
Steve Lianoglou
- [BioC] Drawing multiple sequence logos with seqLogo?
Wolfgang Huber
- [BioC] GenomicRanges countOverlaps error
Steve Lianoglou
- [BioC] Coverage vs GC bias - how to?
Steve Lianoglou
- [BioC] Dye bias adjustment of Illumina Infinium Methylation data
Shi, Tao
- [BioC] Dye bias adjustment of Illumina Infinium Methylation data
Pan Du
- [BioC] tilingArray getting started questions
Noah Dowell
- [BioC] Map the enriched chromosome bands to entrez genes
Xi Zhao
- [BioC] Map the enriched chromosome bands to entrez genes
Wolfgang Huber
- [BioC] rtracklayer interface to GBrowse
Kishor Tappita
- [BioC] Map the enriched chromosome bands to entrez genes
Xi Zhao
- [BioC] Drawing multiple sequence logos with seqLogo?
Nenad Bartonicek
- [BioC] aCGH...'Genomic events'
BTIS Department
- [BioC] GenomicRanges countOverlaps error
Suraj Menon
- [BioC] aCGH...'Genomic events'
Sean Davis
- [BioC] Lumi: problems reading a GenomStudio file
Østensen, Ingrid Helen Garmann
- [BioC] help with fit function
Alberto Goldoni
- [BioC] Postdoctoral Position in Statistical analysis of omics data applied to immunology
Audrey Kauffmann
- [BioC] Map the enriched chromosome bands to entrez genes
Wolfgang Huber
- [BioC] Dye bias adjustment of Illumina Infinium Methylation data
Philip Lijnzaad
- [BioC] help with fit function
James W. MacDonald
- [BioC] Dye bias adjustment of Illumina Infinium Methylation data
Shi, Tao
- [BioC] Dye bias adjustment of Illumina Infinium Methylation data
Shi, Tao
- [BioC] rtracklayer interface to GBrowse
Michael Lawrence
- [BioC] mouse SNPs
Glazko, Galina
- [BioC] mouse SNPs
Vincent Carey
- [BioC] mouse SNPs
Zhu, Julie
- [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's
Marc Carlson
- [BioC] GOstats::geneIdUniverse() and its relation to organism annotation db's
Steve Lianoglou
- [BioC] probeAnno for tilingArray package.
sohkhan at notes.cc.sunysb.edu
- [BioC] Sorry! I made an error in my last email!
Sam L. Carl
- [BioC] pa.calls-function in package "panp"
Samuel Wuest
- [BioC] Bootstrapping paired samples and tiny groups
Benjamin Otto
- [BioC] questions concerning quantile normalization in HTqPCR
Andreia Fonseca
- [BioC] COURSE: R and Bioconductor courses at Imperial College London
North, Bernard V
- [BioC] mouse SNPs
Glazko, Galina
- [BioC] mouse SNPs annotation with ChIPpeakAnno
Zhu, Julie
- [BioC] mouse SNPs annotation with ChIPpeakAnno
Glazko, Galina
- [BioC] mouse SNPs annotation with ChIPpeakAnno
Steffen Durinck
- [BioC] mouse SNPs annotation with ChIPpeakAnno
Glazko, Galina
- [BioC] mouse SNPs annotation with ChIPpeakAnno
Zhu, Julie
- [BioC] pa.calls-function in package "panp"
Fong Chun Chan
- [BioC] problem with using mclapply and org.Hs.eg.db
Andrew Yee
- [BioC] problem with using mclapply and org.Hs.eg.db
Martin Morgan
- [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data
xiangxue Guo
- [BioC] problem with using mclapply and org.Hs.eg.db
Andrew Yee
- [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data
Michael Imbeault
- [BioC] normalization usinf the delta Ct method
Andreia Fonseca
- [BioC] Analysing expression with tiling arrays
January Weiner
- [BioC] Analysing expression with tiling arrays
January Weiner
- [BioC] Analysing expression with tiling arrays
Edwin Groot
- [BioC] Quality control on Human Affymetrix Exon microarrays
B.Misovic at lumc.nl
- [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data
James W. MacDonald
- [BioC] Calculation of t-tests for factorial design
Pascal Gellert
- [BioC] how to open a SNP data file as large as 500M in Windows OR just extract part of data
Martin Morgan
- [BioC] Calculation of t-tests for factorial design
James W. MacDonald
- [BioC] Error in GenomicRanges trying to append two GRangesLists
Elizabeth Purdom
- [BioC] Quality control on Human Affymetrix Exon microarrays
cstrato
- [BioC] Combining data from runs
Supriya Munshaw
- [BioC] Combining data from runs
Wolfgang Huber
- [BioC] Analysing expression with tiling arrays
Wolfgang Huber
- [BioC] normalization usinf the delta Ct method
Wolfgang Huber
- [BioC] probeAnno for tilingArray package.
Wolfgang Huber
- [BioC] Error in GenomicRanges trying to append two GRangesLists
Martin Morgan
- [BioC] Combining data from runs
Michal Okoniewski
- [BioC] Coverage vs GC bias - how to?
Harris A. Jaffee
- [BioC] topGO in combination with Agilent arrays
De Boever Patrick
- [BioC] Agilent probenames and biomaRt
De Boever Patrick
- [BioC] edgeR maPlot - plotting group means?
Iddo Ben-Dov
- [BioC] edgeR maPlot - plotting group means?
Mark Robinson
- [BioC] Genecards v3 access
Daniel Brewer
- [BioC] Genecards v3 access
Sean Davis
- [BioC] some random comments on GRanges
Kasper Daniel Hansen
- [BioC] gcrma hugene10st array
Andrew Einhorn
- [BioC] gcrma hugene10st array
Zhijin Wu
- [BioC] FlowCore/FlowViz issues
Roger Leigh
- [BioC] histogram
Andrew Einhorn
- [BioC] Bioconductor.org to be down Tuesday 14 September
Dan Tenenbaum
- [BioC] PICS mm9 mappability map?
Hamid Bolouri
- [BioC] Genecards v3 access
Marc Carlson
- [BioC] some random comments on GRanges
Michael Lawrence
- [BioC] topGO in combination with Agilent arrays
James W. MacDonald
- [BioC] Agilent probenames and biomaRt
James W. MacDonald
- [BioC] some random comments on GRanges
Michael Lawrence
- [BioC] agilent shRNA library
Giusy Della Gatta
- [BioC] some random comments on GRanges
Martin Morgan
- [BioC] histogram
Wolfgang Huber
- [BioC] SPIA - changes between 1.4.0 and 1.60.
Lavinia Gordon
- [BioC] SPIA - changes between 1.4.0 and 1.60.
Sorin Draghici
- [BioC] SPIA - changes between 1.4.0 and 1.60.
Lavinia Gordon
- [BioC] SPIA - changes between 1.4.0 and 1.60.
Sorin Draghici
- [BioC] SPIA - changes between 1.4.0 and 1.60.
Lavinia Gordon
- [BioC] probeAnno for tilingArray package.
Noah Dowell
- [BioC] How is fold change reported in the samr output?
brian snail
- [BioC] how to do time course data analysis of smd format?
Budhayash Gautam
- [BioC] how to do time course data analysis of smd format?
FengMing Hsu
- [BioC] How is fold change reported in the samr output?
James W. MacDonald
- [BioC] Analysing expression with tiling arrays
January Weiner
- [BioC] How is fold change reported in the samr output?
Johnny H
- [BioC] Bootstrapping paired samples and tiny groups
Naomi Altman
- [BioC] Gating with an ellipsoidGate
Josef Spidlen
- [BioC] probeAnno for tilingArray package.
sohkhan at notes.cc.sunysb.edu
- [BioC] How is fold change reported in the samr output?
James W. MacDonald
- [BioC] crlmm and cluster centres error
Ricardo Vidal
- [BioC] crlmm and cluster centres error
Benilton Carvalho
- [BioC] crlmm and cluster centres error
Ricardo Vidal
- [BioC] crlmm and cluster centres error
Ricardo Vidal
- [BioC] question regarding ALU sequence
Jack Luo
- [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)
Elizabeth Purdom
- [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)
Sean Davis
- [BioC] FlowCore/FlowViz issues
Nishant Gopalakrishnan
- [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)
Elizabeth Purdom
- [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)
Vincent Carey
- [BioC] getting gene ranges from a TranscriptDb (GenomicFeatures package)
Sean Davis
- [BioC] squaring each element of an expression set
Andrew Einhorn
- [BioC] How is fold change reported in the samr output?
brian snail
- [BioC] squaring each element of an expression set
axel.klenk at actelion.com
- [BioC] Gating with an ellipsoidGate
Roger Leigh
- [BioC] Gating with an ellipsoidGate
Roger Leigh
- [BioC] Querying clustering in heatmap.2
Elizabeth Ashley
- [BioC] probeAnno for tilingArray package.
Wolfgang Huber
- [BioC] Comparing 2 GEO datasets
Yogesh
- [BioC] Oligo package crlmm method
Zhu, Julie
- [BioC] Oligo package crlmm method
Benilton Carvalho
- [BioC] Oligo package crlmm method
Zhu, Julie
- [BioC] Comparing 2 GEO datasets
Sean Davis
- [BioC] Comparing 2 GEO datasets
Yogesh
- [BioC] Oligo package crlmm method
Zhu, Julie
- [BioC] Agi4x44PreProcess- RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)
Brown, Joseph
- [BioC] Comparing 2 GEO datasets
Sean Davis
- [BioC] Comparing 2 GEO datasets
Yogesh
- [BioC] BioNet - interpretation of node score
Eva Benito Garagorri
- [BioC] Gating with an ellipsoidGate
Josef Spidlen
- [BioC] e-LICO multi-omics prediction challenge with background knowledge on Obstructive Nephropathy
Adam Woznica
- [BioC] Querying clustering in heatmap.2
Steve Lianoglou
- [BioC] Querying clustering in heatmap.2
Elizabeth Ashley
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Sunny Srivastava
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
January Weiner
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Sunny Srivastava
- [BioC] about ChIPpeakAnno
Zhu, Julie
- [BioC] Images from exon arrays
Popovic, Jelena
- [BioC] R/Bioc workshops at UC Riverside
Thomas Girke
- [BioC] about ChIPpeakAnno
Zhu, Julie
- [BioC] about illumina data
Vincent Carey
- [BioC] about ChIPpeakAnno
Zhu, Julie
- [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside
Neel Aluru
- [BioC] pd.mapping250k.sty package: featureSet:fragment_length
Zhu, Julie
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Wolfgang Huber
- [BioC] How do I get ILMN_nnnn ids?
James Carman
- [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside
Thomas Girke
- [BioC] HTqPCR plotCtRep only accepts 2 replicates
Kee Wong
- [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside
Neel Aluru
- [BioC] pd.mapping250k.sty package: featureSet:fragment_length
James W. MacDonald
- [BioC] [Bioc-sig-seq] R/Bioc workshops at UC Riverside
Dan Tenenbaum
- [BioC] HTqPCR plotCtRep only accepts 2 replicates
Heidi Dvinge
- [BioC] HTqPCR plotCtRep only accepts 2 replicates
Kee Wong
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Sunny Srivastava
- [BioC] pd.mapping250k.sty package: featureSet:fragment_length
Zhu, Julie
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Sean Davis
- [BioC] questions concerning quantile normalization in HTqPCR
Heidi Dvinge
- [BioC] HTqPCR plotCtRep only accepts 2 replicates
Heidi Dvinge
- [BioC] HTqPCR plotCtRep only accepts 2 replicates
Kee Wong
- [BioC] Deadline for submitting a package for BioC 2.7
Hervé Pagès
- [BioC] Question: how to obtain the clusters of genes (basically the ones in the row dendrograms) from an object obtained by heatmap.2 function
Sunny Srivastava
- [BioC] Images from exon arrays
Henrik Bengtsson
- [BioC] about ChIPpeakAnno
Zhu, Julie
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Harry Mangalam
- [BioC] BAF and logR for Affymetrix SNP-arrays
Alla Bulashevska
- [BioC] help with normalization
Casper Shyr
- [BioC] help with normalization
Richard Friedman
- [BioC] how to get the statistics of wilcoxon signed-rank test for the detection call of the MAS5 algorithm?
Jack Luo
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Harry Mangalam
- [BioC] Question on copy number estimation for Affymetrix SNP array 100k and 500k
Zhu, Julie
- [BioC] Setting up model for time course analysis
Casper Shyr
- [BioC] Question on copy number estimation for Affymetrix SNP array 100k and 500k
Henrik Bengtsson
- [BioC] Question on copy number estimation for Affymetrix SNP array 100k and 500k
Zhu, Julie
- [BioC] Setting up model for time course analysis
Heidi Dvinge
- [BioC] AgiMicroRna problems
Mark Cowley
- [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
Pascal Gellert
- [BioC] qPCR Event Calendar - autumn/winter 2010
qPCR Event Calendar
- [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
Mark Cowley
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
James W. MacDonald
- [BioC] how to get the statistics of wilcoxon signed-rank test for the detection call of the MAS5 algorithm?
James W. MacDonald
- [BioC] Hg18 build of org.Hs.eg.db
Andrew Yee
- [BioC] Hg18 build of org.Hs.eg.db
Vincent Carey
- [BioC] Hg18 build of org.Hs.eg.db
Steve Lianoglou
- [BioC] Hg18 build of org.Hs.eg.db
Vincent Carey
- [BioC] Hg18 build of org.Hs.eg.db
Sean Davis
- [BioC] Hg18 build of org.Hs.eg.db
Marc Carlson
- [BioC] simulated array data
Hooiveld, Guido
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
James Carman
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Harry Mangalam
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
James W. MacDonald
- [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
cstrato
- [BioC] error in plotKEGGGraph
Pierre Neuvial
- [BioC] about illumina data
zhliu.tju
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
Matthew Ritchie
- [BioC] about ChIPpeakAnno
Zhu, Julie
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
James Carman
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
James Carman
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
Matthew Ritchie
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
James Carman
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
Matthew Ritchie
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
James Carman
- [BioC] BAF and logR for Affymetrix SNP-arrays
Henrik Bengtsson
- [BioC] error in plotKEGGGraph
Jitao David Zhang
- [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
Pascal Gellert
- [BioC] Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
Michael Imbeault
- [BioC] [beadarray] Converting Probe IDs to ILMN Gene Names...
Mark Dunning
- [BioC] curvHDR
drambald
- [BioC] ChIPpeakAnno -findOverlappingPeaks
Khademul Islam
- [BioC] curvHDR
Heidi Dvinge
- [BioC] Sources of information about amplified genes in cancer
Daniel Brewer
- [BioC] simulated array data
Maarten van Iterson
- [BioC] MeDIP-chip data analysis.
Jinyan Huang
- [BioC] fastq upload time
Daniel.Berner at unibas.ch
- [BioC] fastq upload time
Sean Davis
- [BioC] fastq upload time
Alex Gutteridge
- [BioC] ChIPpeakAnno -findOverlappingPeaks
Zhu, Julie
- [BioC] fastq upload time
Daniel.Berner at unibas.ch
- [BioC] fastq upload time
Marc Noguera
- [BioC] Package "xps" "import.expr.scheme" problem
Naïma Oumouhou
- [BioC] Position for a Computational Biologist/Geneticist, Plant Sciences, Cambridge, UK
Krys Kelly
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Marc Carlson
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
James W. MacDonald
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Martin Morgan
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
James W. MacDonald
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Marc Carlson
- [BioC] QCReport: specifying alt CDF (MoGene-1_0-st-v1)?
Harry Mangalam
- [BioC] Package "xps" "import.expr.scheme" problem
cstrato
- [BioC] error in plotKEGGGraph
Jitao David Zhang
- [BioC] Package "xps" "import.expr.scheme" problem
Naïma Oumouhou
- [BioC] When will illuminaHumanv4BeadID.db package be available?
Asta Laiho
- [BioC] Difficulties with tileHMM's gff output
Rayna
- [BioC] When will illuminaHumanv4BeadID.db package be available?
Mark Dunning
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Paul Geeleher
- [BioC] Difficulties with tileHMM's gff output
Martin Morgan
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Steve Lianoglou
- [BioC] Difficulties with tileHMM's gff output
Peter Humburg
- [BioC] Normalization questions
ANJAN PURKAYASTHA
- [BioC] Normalization questions
Sean Davis
- [BioC] Difficulties with tileHMM's gff output
Rayna
- [BioC] Difficulties with tileHMM's gff output
Peter Humburg
- [BioC] error in plotKEGGGraph
Pierre Neuvial
- [BioC] Package "xps" "import.expr.scheme" problem
cstrato
- [BioC] flowStats quadrantGate and 'names'
Aric Gregson
- [BioC] question regarding differential expression
Jack Luo
- [BioC] question regarding differential expression
Sean Davis
- [BioC] question regarding differential expression
Sunny Srivastava
- [BioC] flowStats quadrantGate and 'names'
Nishant Gopalakrishnan
- [BioC] flowStats quadrantGate and 'names'
Aric Gregson
- [BioC] Problem with genomicFeatures: id2name
Paul Leo
- [BioC] Package "xps" "import.expr.scheme" problem
Naïma Oumouhou
- [BioC] IRanges: Need help speeding up sliding window analysis
Michael Dondrup
- [BioC] question regarding differential expression
Jack Luo
- [BioC] question regarding differential expression
Jack Luo
- [BioC] unusual behavior when concatenating DNAStringSets
Andrew Yee
- [BioC] IRanges: Need help speeding up sliding window analysis
Martin Morgan
- [BioC] question regarding differential expression
James W. MacDonald
- [BioC] PlateCore questions
Sancho, Jose
- [BioC] unusual behavior when concatenating DNAStringSets
Martin Morgan
- [BioC] Package "xps" "import.expr.scheme" problem
cstrato
- [BioC] Puzzled about limma and PAM results validity
Giulio Di Giovanni
- [BioC] Normalization questions
Kevin R. Coombes
- [BioC] IRanges: Need help speeding up sliding window analysis
Patrick Aboyoun
- [BioC] Normalization questions
Sean Davis
- [BioC] Quantile normalization in Ringo package
Mohamed Lajnef
- [BioC] snpMatrix: read.plink() allocMatrix: too many elements specified
Jim Moon
- [BioC] snpMatrix: read.plink() allocMatrix: too many elements specified
Vincent Carey
- [BioC] Images from exon arrays
Popovic, Jelena
- [BioC] snpMatrix: read.plink() allocMatrix: too many elements specified
Benilton Carvalho
- [BioC] Quantile normalization in Ringo package
Noah Dowell
- [BioC] question regarding differential expression
Sunny Srivastava
- [BioC] unbalanced block design using limma
Juan Lin
- [BioC] lmFit- ls vs robust help
Casper Shyr
- [BioC] ShortRead for sequencing data quality assessment
heyi xiao
- [BioC] Question about topTable
Casper Shyr
- [BioC] ShortRead for sequencing data quality assessment
Valerie Obenchain
- [BioC] Puzzled about limma and PAM results validity
Giulio Di Giovanni
- [BioC] BioNet - interpretation of node score (Eva Benito Garagorri)
Daniela Beißer
- [BioC] ShortRead for sequencing data quality assessment
heyi xiao
- [BioC] ShortRead for sequencing data quality assessment
Valerie Obenchain
- [BioC] Help on extracting up-regulated genes with limma
Victoria Hu
- [BioC] Puzzled about limma and PAM results validity
Steve Lianoglou
- [BioC] Puzzled about limma and PAM results validity
Steve Lianoglou
- [BioC] goTools question
Pete Shepard
- [BioC] unbalanced block design using limma
Gordon K Smyth
- [BioC] PlateCore questions
Errol Strain
- [BioC] ShortRead for sequencing data quality assessment
Valerie Obenchain
- [BioC] Question about topTable
Mark Cowley
- [BioC] install error in GeneRfold
Yuan Jian
- [BioC] Question: How does limma derives its logFC value in two colored arrays?
Sunny Srivastava
- [BioC] questions concerning quantile normalization in HTqPCR
Andreia Fonseca
- [BioC] how to save the expression values for two color data after normalization
Budhayash Gautam
- [BioC] Quantile normalization in Ringo package
Joern Toedling
- [BioC] how to save the expression values for two color data after normalization
Steve Lianoglou
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Paul Geeleher
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Steve Lianoglou
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Paul Geeleher
- [BioC] Right skewed histogram of p-values
Giulio Di Giovanni
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Simon Anders
- [BioC] Help on extracting up-regulated genes with limma
Sean Davis
- [BioC] Right skewed histogram of p-values
Simon Anders
- [BioC] Agi4x44PreProcess
Neel Aluru
- [BioC] install error in GeneRfold
Heidi Dvinge
- [BioC] applying p.adjust() in limma
Xiaokuan Wei
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Martin Morgan
- [BioC] applying p.adjust() in limma
Sean Davis
- [BioC] applying p.adjust() in limma
Sunny Srivastava
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Kasper Daniel Hansen
- [BioC] applying p.adjust() in limma
Xiaokuan Wei
- [BioC] question regarding differential expression
Jack Luo
- [BioC] applying p.adjust() in limma
Xiaokuan Wei
- [BioC] question regarding differential expression
Jack Luo
- [BioC] question regarding differential expression
Sean Davis
- [BioC] PM values for probes in a probeset: background corrected and normalized, but not summarized?
Glazko, Galina
- [BioC] PM values for probes in a probeset: background corrected and normalized, but not summarized?
James W. MacDonald
- [BioC] PM values for probes in a probeset: background corrected and normalized, but not summarized?
Glazko, Galina
- [BioC] Simpleaffy problems
ANJAN PURKAYASTHA
- [BioC] question regarding differential expression
Ina Hoeschele
- [BioC] Question: How does limma derives its logFC value in two colored arrays?
Gordon K Smyth
- [BioC] how to save the expression values for two color data after normalization
Mark Cowley
- [BioC] Images from exon arrays
Henrik Bengtsson
- [BioC] Question: How does limma derives its logFC value in two colored arrays?
Sunny Srivastava
- [BioC] Simulation of the beta average
Samor Gandhi
- [BioC] Simulation of the beta average
Sean Davis
- [BioC] Simulation of the beta average
Samor Gandhi
- [BioC] Simulation of the beta average
Sean Davis
- [BioC] Simpleaffy problems
James W. MacDonald
- [BioC] Simulation of the beta average
Samor Gandhi
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Paul Geeleher
- [BioC] Question about CSAMA10 "Lab-8-RNAseqUseCase.pdf" tutorial on bioconductor website.
Martin Morgan
- [BioC] Simulation of the beta average
Tim Triche
- [BioC] Normalization questions
Wolfgang Huber
- [BioC] Feedback on Affymetrix background adjustment
ANJAN PURKAYASTHA
- [BioC] Help Handling potential siRNA off target effects
Lloyd, Bryony
- [BioC] Flagging overlapping gene exons (was Re: Question about CSAMA10 ...)
Steve Lianoglou
- [BioC] AgiMicroRna problems
Mark Cowley
- [BioC] How to perform differential expression analysis on a pre-normalized dataset?
Karthi Sivaraman
- [BioC] how to save the expression values for two color data after normalization
Maciej Jończyk
- [BioC] IRanges: Need help speeding up sliding window analysis
Michael Dondrup
- [BioC] exonmap/xmapcore and splicing.index
Peter Saffrey
- [BioC] Feedback on Affymetrix background adjustment
James W. MacDonald
- [BioC] exonmap/xmapcore and splicing.index
Michal Okoniewski
- [BioC] AgiMicroRna problems
David Ruau
- [BioC] Simulation of the beta average
Shi, Tao
- [BioC] reading data from Beadarray into R
Hajar Hassani Lahsinoui
- [BioC] reading data from Beadarray into R
Steve Lianoglou
- [BioC] reading data from Beadarray into R
Steve Lianoglou
- [BioC] reading data from Beadarray into R
Hajar Hassani Lahsinoui
- [BioC] How to perform differential expression analysis on a pre-normalized dataset?
James W. MacDonald
- [BioC] How to perform differential expression analysis on a pre-normalized dataset?
Karthi Sivaraman
- [BioC] reading data from Beadarray into R
Steve Lianoglou
- [BioC] reading data from Beadarray into R
Hajar Hassani Lahsinoui
- [BioC] reading data from Beadarray into R
Jenny Drnevich
- [BioC] reading data from Beadarray into R
Hajar Hassani Lahsinoui
- [BioC] reading data from Beadarray into R
Jenny Drnevich
- [BioC] reading data from Beadarray into R
Steve Lianoglou
- [BioC] reading data from Beadarray into R
Hajar Hassani Lahsinoui
- [BioC] reading data from Beadarray into R
Steve Lianoglou
- [BioC] reading data from Beadarray into R
Martin Morgan
- [BioC] Simulation of the beta average
Samor Gandhi
- [BioC] AgiMicroRna problems
Mark Cowley
- [BioC] Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value
Steve Lianoglou
- [BioC] reading data from Beadarray into R
Matthew Ritchie
- [BioC] Illumina Methylation data
zhiqun tang
- [BioC] how to save the expression values for two color data after normalization
Budhayash Gautam
- [BioC] how to give input to geneAnswer
Budhayash Gautam
- [BioC] how to give input to geneAnswer
Steve Lianoglou
- [BioC] AgiMicroRna problems
Segal, Corrinne
- [BioC] AgiMicroRna problems
Mark Cowley
- [BioC] Limma: nestedF and interaction term
MassimoAcquaviva at ospedale-gaslini.ge.it
- [BioC] Illumina Methylation data
Pan Du
- [BioC] Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value
Martin Morgan
- [BioC] how to give input to geneAnswer
Gilbert Feng
- [BioC] Illumina Methylation data
Tim Triche
- [BioC] yet another gene universe question
Max Kuhn
- [BioC] Limma: nestedF and interaction term
James W. MacDonald
- [BioC] Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'
Paul Shannon
- [BioC] Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'
Dan Tenenbaum
- [BioC] reading data from Beadarray into R
Hajar Hassani Lahsinoui
- [BioC] Help Handling potential siRNA off target effects
Wolfgang Huber
- [BioC] Problem with genomicFeatures: id2name
Marc Carlson
Last message date:
Thu Sep 30 23:36:16 CEST 2010
Archived on: Thu Sep 30 23:36:28 CEST 2010
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