[BioC] Quality control on Human Affymetrix Exon microarrays
B.Misovic at lumc.nl
B.Misovic at lumc.nl
Fri Sep 10 15:18:45 CEST 2010
Hi Daniel,
First to thank all Bioc people for making/supporting/advising great libraries.
I also use Xps and I remember Christian (the author) said to me once that he is aiming to add/implement affyplm . In the mean time I used Aroma package (which is out of BioC) since they tweaked affyplm and this R tool can also work on "standard" desktop PC.
The probeLm residual figures showed ( for our assay with Human Exon 1.0 ST Array), some chips with hybridization artifacts... so we informed the company doing the hybridization and they were willing to re-hybridize the chips.
Best,
Branko
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