Last updated on 2025-04-19 06:49:59 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| brainR | 13 | ||
| cforward | 13 | ||
| cifti | 3 | 10 | |
| diffr | 13 | ||
| freesurfer | 6 | 7 | |
| fslr | 6 | 7 | |
| gcite | 13 | ||
| gifti | 3 | 10 | |
| glassdoor | 13 | ||
| kirby21.base | 13 | ||
| kirby21.fmri | 13 | ||
| kirby21.t1 | 13 | ||
| leanpubr | 1 | 12 | |
| matlabr | 13 | ||
| mscstts | 6 | 7 | |
| neurobase | 1 | 6 | 6 |
| neurohcp | 13 | ||
| rscopus | 13 | ||
| stapler | 13 | ||
| stepcount | 13 | ||
| WhiteStripe | 6 | 7 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.4.5
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 1.6.10
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
checkmnc-methods.Rd: checkimg
fs_cmd.Rd: readnii
readmgz.Rd: readnii
readmnc.Rd: readnii
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 2.25.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
check_file.Rd: checkimg
fast.Rd: readnii
flirt.Rd: readnii
flirt_apply.Rd: readnii
fnirt.Rd: readnii
fnirt_with_affine.Rd: readnii
fnirt_with_affine_apply.Rd: readnii
fsl_anat.Rd: checkimg
fsl_applywarp.Rd: readnii
fsl_biascorrect.Rd: readnii
fsl_cluster.Rd: readnii
fsl_deface.Rd: readnii
fsl_resample.Rd: readnii
fslabs.Rd: readnii
fslacos.Rd: readnii
fsladd.Rd: readnii
fslasin.Rd: readnii
fslatan.Rd: readnii
fslbet.Rd: readnii
fslbin.Rd: readnii
fslbinv.Rd: readnii
fslchfiletype.Rd: readnii
fslcmd.Rd: readnii
fslcos.Rd: readnii
fslcpgeom.Rd: readnii
fsldilate.Rd: readnii
fsldiv.Rd: readnii
fsledge.Rd: readnii
fslepi_reg.Rd: readnii
fslerode.Rd: readnii
fslexp.Rd: readnii
fslfill.Rd: readnii
fslfill2.Rd: readnii
fslhd.Rd: checkimg
fslindex.Rd: readnii
fsllog.Rd: readnii
fslmask.Rd: readnii
fslmaths.Rd: readnii
fslmerge.Rd: readnii
fslmul.Rd: readnii
fslnan.Rd: readnii
fslnanm.Rd: readnii
fslor.Rd: readnii
fslorient.Rd: readnii
fslrand.Rd: readnii
fslrandn.Rd: readnii
fslrange.Rd: checkimg
fslrecip.Rd: readnii
fslrem.Rd: readnii
fslreorient2std.Rd: readnii
fslrobustfov.Rd: readnii
fslroi.Rd: readnii
fslsin.Rd: readnii
fslslicetimer.Rd: readnii
fslsmooth.Rd: readnii
fslsplit.Rd: readnii
fslsqr.Rd: readnii
fslsqrt.Rd: readnii
fslstats.Rd: checkimg
fslsub.Rd: readnii
fslsub2.Rd: readnii
fslswapdim.Rd: readnii
fsltan.Rd: readnii
fslthresh.Rd: readnii
fslval.Rd: checkimg
fslview.Rd: checkimg
fslvol.Rd: voxdim
fslxor.Rd: readnii
getForms.Rd: checkimg
mcflirt.Rd: readnii
melodic.Rd: checkimg
mni_img.Rd: nifti
readrpi.Rd: readnii
susan.Rd: readnii
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.8.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'getting_data_leanpub.Rmd' using rmarkdown
Quitting from getting_data_leanpub.Rmd:44-49 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [leanpub.com]: SSL/TLS connection timeout
---
Backtrace:
▆
1. ├─leanpubr::lp_summary(slug, error = FALSE, verbose = TRUE)
2. │ └─leanpubr::lp_get_wrapper(...)
3. │ ├─base::do.call(get_results, args = L)
4. │ └─leanpubr (local) `<fn>`(error = FALSE, query = `<list>`, verbose = TRUE, url = "https://leanpub.com/biostatmethods.json")
5. │ ├─base::do.call(verb, list(url = url, query = query, ...))
6. │ └─httr::GET(...)
7. │ └─httr:::request_perform(req, hu$handle$handle)
8. │ ├─httr:::request_fetch(req$output, req$url, handle)
9. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
10. │ └─curl::curl_fetch_memory(url, handle = handle)
11. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_data_leanpub.Rmd' failed with diagnostics:
Timeout was reached [leanpub.com]: SSL/TLS connection timeout
--- failed re-building 'getting_data_leanpub.Rmd'
SUMMARY: processing the following file failed:
'getting_data_leanpub.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 0.6.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ms_list_voices.Rd: GET
ms_synthesize.Rd: POST
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 6, OK: 6
Version: 1.32.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
copyNIfTIHeader.Rd: dropImageDimension, nifti
datatype.Rd: convert.datatype, convert.bitpix
double_ortho.Rd: orthographic
ensure_array.Rd: nifti
fast_readnii.Rd: readNifti, drop_img_dim
img_list_to_ts.Rd: nifti
img_ts_to_df.Rd: nifti
img_ts_to_list.Rd: nifti
img_ts_to_matrix.Rd: nifti
ortho2.Rd: orthographic
random_nifti.Rd: nifti
readNIfTI2.Rd: readNIfTI, drop_img_dim
remake_img.Rd: nifti
replace_dropped_dimensions.Rd: nifti
rescale_img.Rd: drop_img_dim
tempimg.Rd: drop_img_dim
writeNIfTI2.Rd: writeNIfTI, drop_img_dim
write_nifti.Rd: writeNifti
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.32.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘neurobase.Rmd’ using rmarkdown
--- finished re-building ‘neurobase.Rmd’
--- re-building ‘nifti_basics.Rmd’ using rmarkdown
--- finished re-building ‘nifti_basics.Rmd’
--- re-building ‘simple_io.Rmd’ using rmarkdown
trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
Quitting from simple_io.Rmd:30-37 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
---
Backtrace:
▆
1. └─utils::download.file(url, destfile = t1_file)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'simple_io.Rmd' failed with diagnostics:
cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
--- failed re-building ‘simple_io.Rmd’
SUMMARY: processing the following file failed:
‘simple_io.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 2.4.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
download_img_data.Rd: img_data
smooth_hist.Rd: gam
whitestripe_ind_to_mask.Rd: writeNIfTI
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64