[BioC] oneChannelGUI problem

[Marco Fabbri]

I run affylmGUI with plus2 chip and I got the same error when I try to
produce any type of  plot.
I changed the plot option from "Tk R plot" to "R" without any improvement.

Thank you

Marco

On 17/02/2008, raffaele.calogero at unito.it <raffaele.calogero at unito.it> wrote:
> Hi Marco,
> I run oneChannelGUI on a SUN server with SUSE Enterprise
> 10.0. On monday I will check for your problem.
> Could please tell me which graphical output will produce
> errors?
> oneChannelGUI inherits all the graphical functions of
> affylmGUI and , to reduce the RAM consumption
> oneChannelGUI specific graphical functions are directed on
> the R interface and they are not controlled by tcl/tk.
> To understand where the bug is  located I need to
> understand if it is a problem due to the inherited
> affylmGUI graphics or oneChannelGUI specific.
> Could you please try to load some 3'IVT affy .CEL files
> using affylmGUI and let me know if you encounter the same
> problem and on which kind of graphical output?
> Cheers
> Raffaele
>
> Marco wrote:
> >Dear all,
> >I have installed oneChannelGUi on a suse machine and when
> I try to
> >produce any type of graph I got this error:
> >
> >error in
> structure(.external("dotTcl",...,PACKAGE="tcltk"),class=tclObj):
> >use of NULL environmnet is defunct)
> >
> >I attach info:
> >
> >sessionInfo()
> >R version 2.6.2 (2008-02-08)
> >i686-pc-linux-gnu
> >
> >locale:
> >LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
> >
> >attached base packages:
> >[1] tcltk     tools     stats     graphics  grDevices
> utils     datasets
> >[8] methods   base
> >
> >other attached packages:
> >[1] hgu133plus2cdf_2.0.0 tkrplot_0.0-9
> oneChannelGUI_1.4.4
> >[4] tkWidgets_1.16.0     DynDoc_1.16.0
> widgetTools_1.14.0
> >[7] affylmGUI_1.12.0     affy_1.12.2          affyio_1.0.0
> >[10] limma_2.12.0         Biobase_1.16.3
> >
> >loaded via a namespace (and not attached):
> >[1] rcompgen_0.1-17
>
>
>


-- 
---------------------------------------
Marco Fabbri
Istituto Clinico Humanitas
via Manzoni, 56
20089 Rozzano (Mi)
Tel. 028224 5130
Fax 028224 5101