[BioC] oneChannelGUI problem

[raffaele.calogero at unito.it]

I tested oneChannelGUI on my SUSE server and I do not get
any problem in producing TK plots.
It might be a problem of you TCL-TK library installation.
Check the thread:
http://article.gmane.org/gmane.science.biology.informatics.conductor/12496/match=re+bioc+devel+tcl+tk+pckage+bwidget
I hope it helps
Cheers
Raffaele
>
>
> ------------------ Messaggio originale -------------------
> Oggetto: Re: oneChannelGUI problem
> Da:      "Marco Fabbri" <fabbri.marco at gmail.com>
> Data:    Mar, 19 Febbraio 2008, 10:59 am
> A:       "raffaele.calogero at unito.it"
> <raffaele.calogero at unito.it>
> Cc:      bioconductor at stat.math.ethz.ch
> ----------------------------------------------------------
>
> I run affylmGUI with plus2 chip and I got the same error
> when I try to
> produce any type of  plot.
> I changed the plot option from "Tk R plot" to "R" without
> any improvement.
>
> Thank you
>
> Marco
>
> On 17/02/2008, raffaele.calogero at unito.it
> <raffaele.calogero at unito.it> wrote:
>> Hi Marco,
>> I run oneChannelGUI on a SUN server with SUSE Enterprise
>> 10.0. On monday I will check for your problem.
>> Could please tell me which graphical output will produce
>> errors?
>> oneChannelGUI inherits all the graphical functions of
>> affylmGUI and , to reduce the RAM consumption
>> oneChannelGUI specific graphical functions are directed
>> on
>> the R interface and they are not controlled by tcl/tk.
>> To understand where the bug is  located I need to
>> understand if it is a problem due to the inherited
>> affylmGUI graphics or oneChannelGUI specific.
>> Could you please try to load some 3'IVT affy .CEL files
>> using affylmGUI and let me know if you encounter the
>> same
>> problem and on which kind of graphical output?
>> Cheers
>> Raffaele
>>
>> Marco wrote:
>> >Dear all,
>> >I have installed oneChannelGUi on a suse machine and
>> when
>> I try to
>> >produce any type of graph I got this error:
>> >
>> >error in
>> structure(.external("dotTcl",...,PACKAGE="tcltk"),class=tclObj):
>> >use of NULL environmnet is defunct)
>> >
>> >I attach info:
>> >
>> >sessionInfo()
>> >R version 2.6.2 (2008-02-08)
>> >i686-pc-linux-gnu
>> >
>> >locale:
>> >LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>> >
>> >attached base packages:
>> >[1] tcltk     tools     stats     graphics  grDevices
>> utils     datasets
>> >[8] methods   base
>> >
>> >other attached packages:
>> >[1] hgu133plus2cdf_2.0.0 tkrplot_0.0-9
>> oneChannelGUI_1.4.4
>> >[4] tkWidgets_1.16.0     DynDoc_1.16.0
>> widgetTools_1.14.0
>> >[7] affylmGUI_1.12.0     affy_1.12.2
>> affyio_1.0.0
>> >[10] limma_2.12.0         Biobase_1.16.3
>> >
>> >loaded via a namespace (and not attached):
>> >[1] rcompgen_0.1-17
>>
>>
>>
>
>
> --
> ---------------------------------------
> Marco Fabbri
> Istituto Clinico Humanitas
> via Manzoni, 56
> 20089 Rozzano (Mi)
> Tel. 028224 5130
> Fax 028224 5101
>
>