Last updated on 2024-07-24 12:21:22 CEST.
| Package | NOTE | OK |
|---|---|---|
| bigassertr | 13 | |
| bigparallelr | 13 | |
| bigreadr | 13 | |
| bigsnpr | 12 | 1 |
| bigsparser | 2 | 11 |
| bigstatsr | 13 | |
| bigutilsr | 13 | |
| inplace | 13 | |
| mmapcharr | 13 | |
| pcadapt | 4 | 9 |
| primefactr | 13 | |
| rmio | 13 | |
| runonce | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 12, OK: 1
Version: 1.12.2
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
snp_ldsc.html:134:1 (snp_ldsc.Rd:74): Warning: trimming empty <dt>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.12.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
LDpred2.Rd: SFBM-class, nb_cores
SCT.Rd: FBM.code256-class, nb_cores, big_spLogReg, big_spLinReg
bed_MAF.Rd: nb_cores
bed_counts.Rd: nb_cores
bed_cprodVec.Rd: nb_cores
bed_prodVec.Rd: nb_cores
bed_projectPCA.Rd: as_scaling_fun, nb_cores
bed_projectSelfPCA.Rd: nb_cores
bed_randomSVD.Rd: nb_cores
bed_scaleBinom.Rd: nb_cores
bed_tcrossprodSelf.Rd: as_scaling_fun
bigSNP-class.Rd: FBM.code256-class
bigsnpr-package.Rd: FBM.code256-class, nb_cores
snp_MAF.Rd: FBM.code256-class, nb_cores
snp_MAX3.Rd: FBM.code256-class
snp_PRS.Rd: FBM.code256-class, big_univLinReg, big_univLogReg
snp_asGeneticPos.Rd: nb_cores
snp_autoSVD.Rd: FBM.code256-class, as_scaling_fun, nb_cores
snp_beagleImpute.Rd: nb_cores
snp_clumping.Rd: nb_cores, FBM.code256-class
snp_cor.Rd: FBM.code256-class, nb_cores
snp_fastImpute.Rd: FBM.code256-class, nb_cores, FBM
snp_fastImputeSimple.Rd: FBM.code256-class, nb_cores
snp_gc.Rd: big_univLinReg, big_univLogReg
snp_lassosum2.Rd: SFBM-class, nb_cores
snp_ld_scores.Rd: FBM.code256-class, nb_cores
snp_ldsc.Rd: nb_cores, SFBM-class
snp_manhattan.Rd: big_univLinReg, big_univLogReg
snp_pcadapt.Rd: FBM.code256-class, nb_cores
snp_plinkIBDQC.Rd: nb_cores
snp_plinkKINGQC.Rd: nb_cores
snp_prodBGEN.Rd: nb_cores
snp_qq.Rd: big_univLinReg, big_univLogReg
snp_readBGEN.Rd: nb_cores
snp_readBed.Rd: nb_cores
snp_simuPheno.Rd: FBM.code256-class, nb_cores
snp_split.Rd: FBM.code256-class, foreach, nb_cores
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.12.2
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
libs 7.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.12.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gaston’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.7.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rmio’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 13
Version: 1.5.12
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.5.12
Check: Rd files
Result: NOTE
checkRd: (-1) FBM-class.Rd:97: Lost braces; missing escapes or markup?
97 | to be used by package {bigmemory}.
| ^
checkRd: (-1) FBM-class.Rd:99: Lost braces; missing escapes or markup?
99 | to be used by package {bigmemory}.
| ^
checkRd: (-1) big_read.Rd:57: Lost braces; missing escapes or markup?
57 | Read a file as a Filebacked Big Matrix by using package {bigreadr}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.5.12
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rmio’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.5.12
Check: installed package size
Result: NOTE
installed size is 11.6Mb
sub-directories of 1Mb or more:
extdata 2.3Mb
libs 8.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 0.1.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 0.3.0
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.3.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 4.3.5
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
extdata 2.7Mb
libs 2.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 13
Version: 0.1.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13