Last updated on 2024-12-23 12:49:39 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| arkdb | 1 | 1 | 11 |
| codemeta | 13 | ||
| codemetar | 3 | 10 | |
| contentid | 13 | ||
| duckdbfs | 1 | 12 | |
| earthdatalogin | 13 | ||
| EcoNetGen | 13 | ||
| EML | 3 | 10 | |
| emld | 8 | 5 | |
| gbifdb | 1 | 12 | |
| knitcitations | 13 | ||
| minioclient | 13 | ||
| neonstore | 2 | 11 | |
| piggyback | 13 | ||
| pmc | 13 | ||
| rdflib | 13 | ||
| rfigshare | 10 | 3 | |
| rfishbase | 13 | ||
| RNeXML | 10 | 3 | |
| sarsop | 6 | 7 | |
| taxadb | 13 | ||
| taxalight | 13 | ||
| treebase | 13 | ||
| virtuoso | 13 |
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.0.18
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [44s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
6. └─arkdb::ark(...)
7. └─arkdb:::ark_file(...)
8. └─arkdb:::keep_open(...)
9. └─streamable_table$write(data, con, omit_header = TRUE, filename = counter)
10. └─arrow::write_parquet(x, sink = path, ...)
11. ├─ParquetFileWriter$create(...)
12. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...)
13. └─ParquetWriterProperties$create(...)
14. └─arrow:::parquet___WriterProperties___Builder__create()
[ FAIL 3 | WARN 8 | SKIP 8 | PASS 36 ]
Error: Test failures
In addition: Warning message:
Connection is garbage-collected, use dbDisconnect() to avoid this.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.0.18
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘arrow’
Flavor: r-release-macos-x86_64
Version: 0.0.18
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘arrow’
Flavor: r-release-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.3.5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
create_codemeta.Rd: write_json
write_codemeta.Rd: write_json
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.0.9
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [7s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(duckdbfs)
>
>
>
>
> test_check("duckdbfs")
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: rapi_execute(stmt, arrow, integer64)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_execute(stmt, arrow, integer64), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_execute(res@stmt_lst$ref, res@arrow, res@connection@bigint == "integer64")
9: duckdb_execute(res)
10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11: .local(conn, statement, ...)
12: dbSendQuery(conn, statement, ...)
13: dbSendQuery(conn, statement, ...)
14: dbSendStatement(conn, statement, ...)
15: dbSendStatement(conn, statement, ...)
16: DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))
17: DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))
18: load_extension("httpfs", conn = conn, nightly = nightly, force = force)
19: load_httpfs(nightly = FALSE, force = FALSE)
20: eval(code, test_env)
21: eval(code, test_env)
22: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
23: doTryCatch(return(expr), name, parentenv, handler)
24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
25: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
30: test_code(desc, code, env = parent.frame(), reporter = reporter)
31: test_that("extensions installation", { load_httpfs(nightly = FALSE, force = FALSE) exts <- duckdb_extensions() status <- exts[exts$extension_name == "httpfs", ] expect_true(status$installed) expect_equal(status$installed_from, "core") load_spatial(nightly = FALSE, force = TRUE) exts <- duckdb_extensions() status <- exts[exts$extension_name == "httpfs", ] expect_true(status$installed) expect_equal(status$installed_from, "core")})
32: eval(code, test_env)
33: eval(code, test_env)
34: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
35: doTryCatch(return(expr), name, parentenv, handler)
36: tryCatchOne(expr, names, parentenv, handlers[[1L]])
37: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
38: doTryCatch(return(expr), name, parentenv, handler)
39: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
40: tryCatchList(expr, classes, parentenv, handlers)
41: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
42: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
43: source_file(path, env = env(env), desc = desc, error_call = error_call)
44: FUN(X[[i]], ...)
45: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
46: doTryCatch(return(expr), name, parentenv, handler)
47: tryCatchOne(expr, names, parentenv, handlers[[1L]])
48: tryCatchList(expr, classes, parentenv, handlers)
49: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
50: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
51: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
52: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
53: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
54: test_check("duckdbfs")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.0.6.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
write_eml.Rd: write_xml
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.6.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
write_eml.Rd: write_xml
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 8, OK: 5
Version: 0.5.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test_gbifdb.R:30:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gbifdb.R:16:3'): gbif_local() ──────────────────────────────────
Error: This build of the arrow package does not support Datasets
Backtrace:
▆
1. └─gbifdb::gbif_local(path, backend = "arrow") at test_gbifdb.R:16:3
2. └─arrow::open_dataset(dir)
3. └─arrow:::stop_if_no_datasets()
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 2 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.5.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘rhdf5’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.3.8
Check: Rd files
Result: NOTE
checkRd: (-1) fs_search.Rd:76: Lost braces
76 | \\code{\link{fs_auth}} \code{\link{fs_browse}}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 2.4.11
Check: Rd files
Result: NOTE
checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 0.6.15
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
bin 4.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13