[R-sig-ME] lme4.0
Joshua Wiley
jwiley.psych at gmail.com
Sat Apr 7 23:46:47 CEST 2012
FYI, yesterday I was able to install lme4 and lme4.0 from source form
R forge without a glitch on a Windows x64 system with the most recent
version of Rtools and unsuffered consequences.
Josh
On Sat, Apr 7, 2012 at 2:07 PM, Ben Bolker <bbolker at gmail.com> wrote:
> Hmmm.
>
> I don't have access to a Windows machine before Monday. Thanks for
> the heads-up: you *should* in general be able to do this, I will check
> to see what's going on. In the meantime, I was going to say that you
> could get Windows binaries etc. from lme4.r-forge.r-project.org/repos ,
> but I see that I failed to build/install these for Windows. Sorry,
> thanks for your patience ...
>
> Ben Bolker
>
>
> On 12-04-07 05:17 AM, lancelot wrote:
>> Dear Ben,
>>
>> The installation of lme4 from source does not work for me:
>>
>>> install.packages("lme4",repos="http://r-forge.r-project.org",
>> type="source")
>> Installation d(es) package(s) dans ‘C:/R/RLIBS’
>> (car ‘lib’ n'est pas spécifié)
>> essai de l'URL
>> 'http://r-forge.r-project.org/src/contrib/lme4_0.999902344-0.tar.gz'
>> Content type 'application/x-gzip' length 1254848 bytes (1.2 Mb)
>> URL ouverte
>> downloaded 1.2 Mb
>> * installing *source* package 'lme4' ...
>> ** libs
>> cygwin warning:
>> MS-DOS style path detected: C:/R/etc/i386/Makeconf
>> Preferred POSIX equivalent is: /cygdrive/c/R/etc/i386/Makeconf
>> CYGWIN environment variable option "nodosfilewarning" turns off this
>> warning.
>> Consult the user's guide for more details about POSIX paths:
>> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>> -Wall -mtune=core2 -c external.cpp -o external.o
>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>> -Wall -mtune=core2 -c glmFamily.cpp -o glmFamily.o
>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>> -Wall -mtune=core2 -c mcmcsamp.cpp -o mcmcsamp.o
>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>> -Wall -mtune=core2 -c optimizer.cpp -o optimizer.o
>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>> -Wall -mtune=core2 -c predModule.cpp -o predModule.o
>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>> -Wall -mtune=core2 -c respModule.cpp -o respModule.o
>> Syntax error: Unterminated quoted string
>> make: *** [lme4.dll] Error 2
>> ERROR: compilation failed for package 'lme4'
>> * removing 'C:/R/RLIBS/lme4'
>>
>> Les packages source téléchargés sont dans
>> ‘C:\Temp\RtmpYziZpk\downloaded_packages’
>> Messages d'avis :
>> 1: l'exécution de la commande 'C:/R/bin/i386/R CMD INSTALL -l
>> "C:/R/RLIBS"
>> C:\Temp\RtmpYziZpk/downloaded_packages/lme4_0.999902344-0.tar.gz'
>> renvoie un statut 1
>> 2: In install.packages("lme4", repos = "http://r-forge.r-project.org", :
>> l'installation du package ‘lme4’ a eu un statut de sortie non nul
>>
>>
>> My configuration:
>>
>>> sessionInfo()
>> R version 2.15.0 (2012-03-30)
>> Platform: i386-pc-mingw32/i386 (32-bit)
>>
>> locale:
>> [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
>> LC_MONETARY=French_France.1252 LC_NUMERIC=C LC_TIME=French_France.1252
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods base
>>
>> other attached packages:
>> [1] fortunes_1.4-2
>>
>> loaded via a namespace (and not attached):
>> [1] tools_2.15.0
>>
>> All the best,
>>
>> Renaud
>>
>>
>>
>>
>> Le 06/04/2012 13:34, Ben Bolker a écrit :
>>> Things are discombobulated on R-forge, it looks like (as is not so
>>> unusual these days) -- perhaps due to the transition to R 2.15.
>>>
>>> We've tried to put information at http://lme4.r-forge.r-project.org
>>> about current versions etc..
>>>
>>> For right now, there are only three versions you should think about at
>>> all:
>>>
>>> lme4 on CRAN "0.999375-42"
>>> lme4 on r-forge -- development version, supersedes lme4Eigen and
>>> (eventually) CRAN-lme4
>>> lme4.0 on r-forge: backward compatibility branch
>>>
>>> Ben Bolker
>>>
>>>
>>> On 12-04-06 02:05 AM, Antonio P. Ramos wrote:
>>>> it doesn't work either though I am geting a weird error message:
>>>>
>>>>> install.packages("lme4.0", repos="http://r-forge.r-project.org",
>>>> type="source")
>>>> Installing package(s) into
>>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>>> (as ‘lib’ is unspecified)
>>>> trying URL
>>>> 'http://r-forge.r-project.org/src/contrib/lme4.0_0.9999-1.tar.gz'
>>>> Content type 'application/x-gzip' length 1037389 bytes (1013 Kb)
>>>> opened URL
>>>> ==================================================
>>>> downloaded 1013 Kb
>>>>
>>>> * installing *source* package ‘lme4.0’ ...
>>>> ** libs
>>>> *** arch - i386
>>>> sh: make: command not found
>>>> ERROR: compilation failed for package ‘lme4.0’
>>>> * removing
>>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/lme4.0’
>>>> Warning in install.packages :
>>>> installation of package ‘lme4.0’ had non-zero exit status
>>>>
>>>> The downloaded packages are in
>>>> ‘/private/var/folders/fl/ckbqsv051f1fj4njt__g9thw0000gn/T/RtmpQnLuAo/downloaded_packages’
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Thu, Apr 5, 2012 at 10:55 PM, lancelot<renaud.lancelot at cirad.fr
>>>> <mailto:renaud.lancelot at cirad.fr>> wrote:
>>>>
>>>> Well...
>>>>
>>>>
>>>> >
>>>> install.packages("lme4.0",__repos="http://r-forge.r-__project.org
>>>> <http://r-forge.r-project.org>")
>>>> Installation d(es) package(s) dans ‘C:/R/RLIBS’
>>>> (car ‘lib’ n'est pas spécifié)
>>>> Message d'avis :
>>>>
>>>> package ‘lme4.0’ is not available (for R version 2.15.0)
>>>>
>>>> lme4.0 seems to be available only from
>>>> http://lme4.r-forge.r-project.__org/repos/src/contrib/
>>>> <http://lme4.r-forge.r-project.org/repos/src/contrib/>
>>>>
>>>> So it should be installed from source:
>>>>
>>>> install.packages("lme4.0", repos="http://r-forge.r-__project.org
>>>> <http://r-forge.r-project.org>", type="source")
>>>>
>>>> which works fine for me.
>>>>
>>>>
>>>> However, I now have on my system:
>>>>
>>>> lme4
>>>> lme4a
>>>> lme4b
>>>> lme4.0
>>>> lme4Eigen
>>>>
>>>> This is really confusing, even for lme4xxx aficionados!
>>>>
>>>> All the best,
>>>>
>>>> Renaud
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Renaud Lancelot
>>>> EDENext Project, coordinator: http://www.edenext.eu/
>>>>
>>>> CIRAD, UMR15, Campus International de Baillarguet TA A-DIR / B
>>>> F34398 Montpellier
>>>>
>>>> Tel. +33 4 67 59 37 17<tel:%2B33%204%2067%2059%2037%2017> - Fax
>>>> +33 4 67 59 37 98<tel:%2B33%204%2067%2059%2037%2098>
>>>> Secr. +33 4 67 59 37 37<tel:%2B33%204%2067%2059%2037%2037> -
>>>> Cell.
>>>> +33 6 77 52 08 69<tel:%2B33%206%2077%2052%2008%2069>
>>>>
>>>>
>>>> _________________________________________________
>>>> R-sig-mixed-models at r-project.__org
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>>>>
>>>
>>>
>>
>
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--
Joshua Wiley
Ph.D. Student, Health Psychology
Programmer Analyst II, Statistical Consulting Group
University of California, Los Angeles
https://joshuawiley.com/
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