[R-sig-ME] lme4.0
Ben Bolker
bbolker at gmail.com
Sun Apr 8 00:02:51 CEST 2012
On 12-04-07 05:46 PM, Joshua Wiley wrote:
> FYI, yesterday I was able to install lme4 and lme4.0 from source form
> R forge without a glitch on a Windows x64 system with the most recent
> version of Rtools and unsuffered consequences.
>
> Josh
>
Thanks. I just built current versions of lme4.0 and lme4 on
win-builder.r-project.org and installed them in the lme4 repository --
it will take a little while for that change to propagate, but that
should be a good fallback for when r-forge is glitchy.
Ben
> On Sat, Apr 7, 2012 at 2:07 PM, Ben Bolker <bbolker at gmail.com> wrote:
>> Hmmm.
>>
>> I don't have access to a Windows machine before Monday. Thanks for
>> the heads-up: you *should* in general be able to do this, I will check
>> to see what's going on. In the meantime, I was going to say that you
>> could get Windows binaries etc. from lme4.r-forge.r-project.org/repos ,
>> but I see that I failed to build/install these for Windows. Sorry,
>> thanks for your patience ...
>>
>> Ben Bolker
>>
>>
>> On 12-04-07 05:17 AM, lancelot wrote:
>>> Dear Ben,
>>>
>>> The installation of lme4 from source does not work for me:
>>>
>>>> install.packages("lme4",repos="http://r-forge.r-project.org",
>>> type="source")
>>> Installation d(es) package(s) dans ‘C:/R/RLIBS’
>>> (car ‘lib’ n'est pas spécifié)
>>> essai de l'URL
>>> 'http://r-forge.r-project.org/src/contrib/lme4_0.999902344-0.tar.gz'
>>> Content type 'application/x-gzip' length 1254848 bytes (1.2 Mb)
>>> URL ouverte
>>> downloaded 1.2 Mb
>>> * installing *source* package 'lme4' ...
>>> ** libs
>>> cygwin warning:
>>> MS-DOS style path detected: C:/R/etc/i386/Makeconf
>>> Preferred POSIX equivalent is: /cygdrive/c/R/etc/i386/Makeconf
>>> CYGWIN environment variable option "nodosfilewarning" turns off this
>>> warning.
>>> Consult the user's guide for more details about POSIX paths:
>>> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
>>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>>> -Wall -mtune=core2 -c external.cpp -o external.o
>>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>>> -Wall -mtune=core2 -c glmFamily.cpp -o glmFamily.o
>>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>>> -Wall -mtune=core2 -c mcmcsamp.cpp -o mcmcsamp.o
>>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>>> -Wall -mtune=core2 -c optimizer.cpp -o optimizer.o
>>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>>> -Wall -mtune=core2 -c predModule.cpp -o predModule.o
>>> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
>>> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
>>> -Wall -mtune=core2 -c respModule.cpp -o respModule.o
>>> Syntax error: Unterminated quoted string
>>> make: *** [lme4.dll] Error 2
>>> ERROR: compilation failed for package 'lme4'
>>> * removing 'C:/R/RLIBS/lme4'
>>>
>>> Les packages source téléchargés sont dans
>>> ‘C:\Temp\RtmpYziZpk\downloaded_packages’
>>> Messages d'avis :
>>> 1: l'exécution de la commande 'C:/R/bin/i386/R CMD INSTALL -l
>>> "C:/R/RLIBS"
>>> C:\Temp\RtmpYziZpk/downloaded_packages/lme4_0.999902344-0.tar.gz'
>>> renvoie un statut 1
>>> 2: In install.packages("lme4", repos = "http://r-forge.r-project.org", :
>>> l'installation du package ‘lme4’ a eu un statut de sortie non nul
>>>
>>>
>>> My configuration:
>>>
>>>> sessionInfo()
>>> R version 2.15.0 (2012-03-30)
>>> Platform: i386-pc-mingw32/i386 (32-bit)
>>>
>>> locale:
>>> [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
>>> LC_MONETARY=French_France.1252 LC_NUMERIC=C LC_TIME=French_France.1252
>>>
>>> attached base packages:
>>> [1] stats graphics grDevices utils datasets methods base
>>>
>>> other attached packages:
>>> [1] fortunes_1.4-2
>>>
>>> loaded via a namespace (and not attached):
>>> [1] tools_2.15.0
>>>
>>> All the best,
>>>
>>> Renaud
>>>
>>>
>>>
>>>
>>> Le 06/04/2012 13:34, Ben Bolker a écrit :
>>>> Things are discombobulated on R-forge, it looks like (as is not so
>>>> unusual these days) -- perhaps due to the transition to R 2.15.
>>>>
>>>> We've tried to put information at http://lme4.r-forge.r-project.org
>>>> about current versions etc..
>>>>
>>>> For right now, there are only three versions you should think about at
>>>> all:
>>>>
>>>> lme4 on CRAN "0.999375-42"
>>>> lme4 on r-forge -- development version, supersedes lme4Eigen and
>>>> (eventually) CRAN-lme4
>>>> lme4.0 on r-forge: backward compatibility branch
>>>>
>>>> Ben Bolker
>>>>
>>>>
>>>> On 12-04-06 02:05 AM, Antonio P. Ramos wrote:
>>>>> it doesn't work either though I am geting a weird error message:
>>>>>
>>>>>> install.packages("lme4.0", repos="http://r-forge.r-project.org",
>>>>> type="source")
>>>>> Installing package(s) into
>>>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>>>> (as ‘lib’ is unspecified)
>>>>> trying URL
>>>>> 'http://r-forge.r-project.org/src/contrib/lme4.0_0.9999-1.tar.gz'
>>>>> Content type 'application/x-gzip' length 1037389 bytes (1013 Kb)
>>>>> opened URL
>>>>> ==================================================
>>>>> downloaded 1013 Kb
>>>>>
>>>>> * installing *source* package ‘lme4.0’ ...
>>>>> ** libs
>>>>> *** arch - i386
>>>>> sh: make: command not found
>>>>> ERROR: compilation failed for package ‘lme4.0’
>>>>> * removing
>>>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/lme4.0’
>>>>> Warning in install.packages :
>>>>> installation of package ‘lme4.0’ had non-zero exit status
>>>>>
>>>>> The downloaded packages are in
>>>>> ‘/private/var/folders/fl/ckbqsv051f1fj4njt__g9thw0000gn/T/RtmpQnLuAo/downloaded_packages’
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Thu, Apr 5, 2012 at 10:55 PM, lancelot<renaud.lancelot at cirad.fr
>>>>> <mailto:renaud.lancelot at cirad.fr>> wrote:
>>>>>
>>>>> Well...
>>>>>
>>>>>
>>>>> >
>>>>> install.packages("lme4.0",__repos="http://r-forge.r-__project.org
>>>>> <http://r-forge.r-project.org>")
>>>>> Installation d(es) package(s) dans ‘C:/R/RLIBS’
>>>>> (car ‘lib’ n'est pas spécifié)
>>>>> Message d'avis :
>>>>>
>>>>> package ‘lme4.0’ is not available (for R version 2.15.0)
>>>>>
>>>>> lme4.0 seems to be available only from
>>>>> http://lme4.r-forge.r-project.__org/repos/src/contrib/
>>>>> <http://lme4.r-forge.r-project.org/repos/src/contrib/>
>>>>>
>>>>> So it should be installed from source:
>>>>>
>>>>> install.packages("lme4.0", repos="http://r-forge.r-__project.org
>>>>> <http://r-forge.r-project.org>", type="source")
>>>>>
>>>>> which works fine for me.
>>>>>
>>>>>
>>>>> However, I now have on my system:
>>>>>
>>>>> lme4
>>>>> lme4a
>>>>> lme4b
>>>>> lme4.0
>>>>> lme4Eigen
>>>>>
>>>>> This is really confusing, even for lme4xxx aficionados!
>>>>>
>>>>> All the best,
>>>>>
>>>>> Renaud
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Renaud Lancelot
>>>>> EDENext Project, coordinator: http://www.edenext.eu/
>>>>>
>>>>> CIRAD, UMR15, Campus International de Baillarguet TA A-DIR / B
>>>>> F34398 Montpellier
>>>>>
>>>>> Tel. +33 4 67 59 37 17<tel:%2B33%204%2067%2059%2037%2017> - Fax
>>>>> +33 4 67 59 37 98<tel:%2B33%204%2067%2059%2037%2098>
>>>>> Secr. +33 4 67 59 37 37<tel:%2B33%204%2067%2059%2037%2037> -
>>>>> Cell.
>>>>> +33 6 77 52 08 69<tel:%2B33%206%2077%2052%2008%2069>
>>>>>
>>>>>
>>>>> _________________________________________________
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>>>>>
>>>>>
>>>>
>>>>
>>>
>>
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