[R-sig-ME] lme4.0

Ben Bolker bbolker at gmail.com
Sat Apr 7 23:07:34 CEST 2012


  Hmmm.

  I don't have access to a Windows machine before Monday.  Thanks for
the heads-up: you *should* in general be able to do this, I will check
to see what's going on.  In the meantime, I was going to say that you
could get Windows binaries etc. from lme4.r-forge.r-project.org/repos ,
but I see that I failed to build/install these for Windows.  Sorry,
thanks for your patience ...

  Ben Bolker


On 12-04-07 05:17 AM, lancelot wrote:
> Dear Ben,
> 
> The installation of lme4 from source does not work for me:
> 
>> install.packages("lme4",repos="http://r-forge.r-project.org",
> type="source")
> Installation d(es) package(s) dans ‘C:/R/RLIBS’
> (car ‘lib’ n'est pas spécifié)
> essai de l'URL
> 'http://r-forge.r-project.org/src/contrib/lme4_0.999902344-0.tar.gz'
> Content type 'application/x-gzip' length 1254848 bytes (1.2 Mb)
> URL ouverte
> downloaded 1.2 Mb
> * installing *source* package 'lme4' ...
> ** libs
> cygwin warning:
>   MS-DOS style path detected: C:/R/etc/i386/Makeconf
>   Preferred POSIX equivalent is: /cygdrive/c/R/etc/i386/Makeconf
>   CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
>   Consult the user's guide for more details about POSIX paths:
>     http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2
> -Wall  -mtune=core2 -c external.cpp -o external.o
> g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2
> -Wall  -mtune=core2 -c glmFamily.cpp -o glmFamily.o
> g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2
> -Wall  -mtune=core2 -c mcmcsamp.cpp -o mcmcsamp.o
> g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2
> -Wall  -mtune=core2 -c optimizer.cpp -o optimizer.o
> g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2
> -Wall  -mtune=core2 -c predModule.cpp -o predModule.o
> g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2
> -Wall  -mtune=core2 -c respModule.cpp -o respModule.o
> Syntax error: Unterminated quoted string
> make: *** [lme4.dll] Error 2
> ERROR: compilation failed for package 'lme4'
> * removing 'C:/R/RLIBS/lme4'
> 
> Les packages source téléchargés sont dans
>         ‘C:\Temp\RtmpYziZpk\downloaded_packages’
> Messages d'avis :
> 1: l'exécution de la commande 'C:/R/bin/i386/R CMD INSTALL -l
> "C:/R/RLIBS"
> C:\Temp\RtmpYziZpk/downloaded_packages/lme4_0.999902344-0.tar.gz'
> renvoie un statut 1
> 2: In install.packages("lme4", repos = "http://r-forge.r-project.org",  :
>   l'installation du package ‘lme4’ a eu un statut de sortie non nul
> 
> 
> My configuration:
> 
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: i386-pc-mingw32/i386 (32-bit)
> 
> locale:
> [1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252
> LC_MONETARY=French_France.1252 LC_NUMERIC=C LC_TIME=French_France.1252
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] fortunes_1.4-2
> 
> loaded via a namespace (and not attached):
> [1] tools_2.15.0
> 
> All the best,
> 
> Renaud
> 
> 
> 
> 
> Le 06/04/2012 13:34, Ben Bolker a écrit :
>>    Things are discombobulated on R-forge, it looks like (as is not so
>> unusual these days) -- perhaps due to the transition to R 2.15.
>>
>>    We've tried to put information at http://lme4.r-forge.r-project.org
>> about current versions etc..
>>
>>    For right now, there are only three versions you should think about at
>> all:
>>
>>    lme4 on CRAN "0.999375-42"
>>    lme4 on r-forge -- development version, supersedes lme4Eigen and
>> (eventually) CRAN-lme4
>>    lme4.0 on r-forge: backward compatibility branch
>>
>>    Ben Bolker
>>
>>
>> On 12-04-06 02:05 AM, Antonio P. Ramos wrote:
>>> it doesn't work either though I am geting a weird error message:
>>>
>>>> install.packages("lme4.0", repos="http://r-forge.r-project.org",
>>> type="source")
>>> Installing package(s) into
>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>> (as ‘lib’ is unspecified)
>>> trying URL
>>> 'http://r-forge.r-project.org/src/contrib/lme4.0_0.9999-1.tar.gz'
>>> Content type 'application/x-gzip' length 1037389 bytes (1013 Kb)
>>> opened URL
>>> ==================================================
>>> downloaded 1013 Kb
>>>
>>> * installing *source* package ‘lme4.0’ ...
>>> ** libs
>>> *** arch - i386
>>> sh: make: command not found
>>> ERROR: compilation failed for package ‘lme4.0’
>>> * removing
>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/lme4.0’
>>> Warning in install.packages :
>>>    installation of package ‘lme4.0’ had non-zero exit status
>>>
>>> The downloaded packages are in
>>> ‘/private/var/folders/fl/ckbqsv051f1fj4njt__g9thw0000gn/T/RtmpQnLuAo/downloaded_packages’
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On Thu, Apr 5, 2012 at 10:55 PM, lancelot<renaud.lancelot at cirad.fr
>>> <mailto:renaud.lancelot at cirad.fr>>  wrote:
>>>
>>>      Well...
>>>
>>>
>>>      > 
>>> install.packages("lme4.0",__repos="http://r-forge.r-__project.org
>>>      <http://r-forge.r-project.org>")
>>>      Installation d(es) package(s) dans ‘C:/R/RLIBS’
>>>      (car ‘lib’ n'est pas spécifié)
>>>      Message d'avis :
>>>
>>>      package ‘lme4.0’ is not available (for R version 2.15.0)
>>>
>>>      lme4.0 seems to be available only from
>>>      http://lme4.r-forge.r-project.__org/repos/src/contrib/
>>>      <http://lme4.r-forge.r-project.org/repos/src/contrib/>
>>>
>>>      So it should be installed from source:
>>>
>>>      install.packages("lme4.0", repos="http://r-forge.r-__project.org
>>>      <http://r-forge.r-project.org>", type="source")
>>>
>>>      which works fine for me.
>>>
>>>
>>>      However, I now have on my system:
>>>
>>>      lme4
>>>      lme4a
>>>      lme4b
>>>      lme4.0
>>>      lme4Eigen
>>>
>>>      This is really confusing, even for lme4xxx aficionados!
>>>
>>>      All the best,
>>>
>>>      Renaud
>>>
>>>
>>>
>>>
>>>
>>>
>>>      --
>>>      Renaud Lancelot
>>>      EDENext Project, coordinator: http://www.edenext.eu/
>>>
>>>      CIRAD, UMR15, Campus International de Baillarguet TA A-DIR / B
>>>      F34398 Montpellier
>>>
>>>      Tel.  +33 4 67 59 37 17<tel:%2B33%204%2067%2059%2037%2017>   -  Fax
>>>       +33 4 67 59 37 98<tel:%2B33%204%2067%2059%2037%2098>
>>>      Secr. +33 4 67 59 37 37<tel:%2B33%204%2067%2059%2037%2037>   -
>>> Cell.
>>>      +33 6 77 52 08 69<tel:%2B33%206%2077%2052%2008%2069>
>>>
>>>
>>>      _________________________________________________
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>>>
>>
>>
>




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