[R-sig-ME] lme4.0
Ben Bolker
bbolker at gmail.com
Sat Apr 7 23:07:34 CEST 2012
Hmmm.
I don't have access to a Windows machine before Monday. Thanks for
the heads-up: you *should* in general be able to do this, I will check
to see what's going on. In the meantime, I was going to say that you
could get Windows binaries etc. from lme4.r-forge.r-project.org/repos ,
but I see that I failed to build/install these for Windows. Sorry,
thanks for your patience ...
Ben Bolker
On 12-04-07 05:17 AM, lancelot wrote:
> Dear Ben,
>
> The installation of lme4 from source does not work for me:
>
>> install.packages("lme4",repos="http://r-forge.r-project.org",
> type="source")
> Installation d(es) package(s) dans ‘C:/R/RLIBS’
> (car ‘lib’ n'est pas spécifié)
> essai de l'URL
> 'http://r-forge.r-project.org/src/contrib/lme4_0.999902344-0.tar.gz'
> Content type 'application/x-gzip' length 1254848 bytes (1.2 Mb)
> URL ouverte
> downloaded 1.2 Mb
> * installing *source* package 'lme4' ...
> ** libs
> cygwin warning:
> MS-DOS style path detected: C:/R/etc/i386/Makeconf
> Preferred POSIX equivalent is: /cygdrive/c/R/etc/i386/Makeconf
> CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
> Consult the user's guide for more details about POSIX paths:
> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
> -Wall -mtune=core2 -c external.cpp -o external.o
> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
> -Wall -mtune=core2 -c glmFamily.cpp -o glmFamily.o
> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
> -Wall -mtune=core2 -c mcmcsamp.cpp -o mcmcsamp.o
> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
> -Wall -mtune=core2 -c optimizer.cpp -o optimizer.o
> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
> -Wall -mtune=core2 -c predModule.cpp -o predModule.o
> g++ -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE
> -I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include" -O2
> -Wall -mtune=core2 -c respModule.cpp -o respModule.o
> Syntax error: Unterminated quoted string
> make: *** [lme4.dll] Error 2
> ERROR: compilation failed for package 'lme4'
> * removing 'C:/R/RLIBS/lme4'
>
> Les packages source téléchargés sont dans
> ‘C:\Temp\RtmpYziZpk\downloaded_packages’
> Messages d'avis :
> 1: l'exécution de la commande 'C:/R/bin/i386/R CMD INSTALL -l
> "C:/R/RLIBS"
> C:\Temp\RtmpYziZpk/downloaded_packages/lme4_0.999902344-0.tar.gz'
> renvoie un statut 1
> 2: In install.packages("lme4", repos = "http://r-forge.r-project.org", :
> l'installation du package ‘lme4’ a eu un statut de sortie non nul
>
>
> My configuration:
>
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
> LC_MONETARY=French_France.1252 LC_NUMERIC=C LC_TIME=French_France.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] fortunes_1.4-2
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.0
>
> All the best,
>
> Renaud
>
>
>
>
> Le 06/04/2012 13:34, Ben Bolker a écrit :
>> Things are discombobulated on R-forge, it looks like (as is not so
>> unusual these days) -- perhaps due to the transition to R 2.15.
>>
>> We've tried to put information at http://lme4.r-forge.r-project.org
>> about current versions etc..
>>
>> For right now, there are only three versions you should think about at
>> all:
>>
>> lme4 on CRAN "0.999375-42"
>> lme4 on r-forge -- development version, supersedes lme4Eigen and
>> (eventually) CRAN-lme4
>> lme4.0 on r-forge: backward compatibility branch
>>
>> Ben Bolker
>>
>>
>> On 12-04-06 02:05 AM, Antonio P. Ramos wrote:
>>> it doesn't work either though I am geting a weird error message:
>>>
>>>> install.packages("lme4.0", repos="http://r-forge.r-project.org",
>>> type="source")
>>> Installing package(s) into
>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>> (as ‘lib’ is unspecified)
>>> trying URL
>>> 'http://r-forge.r-project.org/src/contrib/lme4.0_0.9999-1.tar.gz'
>>> Content type 'application/x-gzip' length 1037389 bytes (1013 Kb)
>>> opened URL
>>> ==================================================
>>> downloaded 1013 Kb
>>>
>>> * installing *source* package ‘lme4.0’ ...
>>> ** libs
>>> *** arch - i386
>>> sh: make: command not found
>>> ERROR: compilation failed for package ‘lme4.0’
>>> * removing
>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/lme4.0’
>>> Warning in install.packages :
>>> installation of package ‘lme4.0’ had non-zero exit status
>>>
>>> The downloaded packages are in
>>> ‘/private/var/folders/fl/ckbqsv051f1fj4njt__g9thw0000gn/T/RtmpQnLuAo/downloaded_packages’
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On Thu, Apr 5, 2012 at 10:55 PM, lancelot<renaud.lancelot at cirad.fr
>>> <mailto:renaud.lancelot at cirad.fr>> wrote:
>>>
>>> Well...
>>>
>>>
>>> >
>>> install.packages("lme4.0",__repos="http://r-forge.r-__project.org
>>> <http://r-forge.r-project.org>")
>>> Installation d(es) package(s) dans ‘C:/R/RLIBS’
>>> (car ‘lib’ n'est pas spécifié)
>>> Message d'avis :
>>>
>>> package ‘lme4.0’ is not available (for R version 2.15.0)
>>>
>>> lme4.0 seems to be available only from
>>> http://lme4.r-forge.r-project.__org/repos/src/contrib/
>>> <http://lme4.r-forge.r-project.org/repos/src/contrib/>
>>>
>>> So it should be installed from source:
>>>
>>> install.packages("lme4.0", repos="http://r-forge.r-__project.org
>>> <http://r-forge.r-project.org>", type="source")
>>>
>>> which works fine for me.
>>>
>>>
>>> However, I now have on my system:
>>>
>>> lme4
>>> lme4a
>>> lme4b
>>> lme4.0
>>> lme4Eigen
>>>
>>> This is really confusing, even for lme4xxx aficionados!
>>>
>>> All the best,
>>>
>>> Renaud
>>>
>>>
>>>
>>>
>>>
>>>
>>> --
>>> Renaud Lancelot
>>> EDENext Project, coordinator: http://www.edenext.eu/
>>>
>>> CIRAD, UMR15, Campus International de Baillarguet TA A-DIR / B
>>> F34398 Montpellier
>>>
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>>> Cell.
>>> +33 6 77 52 08 69<tel:%2B33%206%2077%2052%2008%2069>
>>>
>>>
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>>
>>
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