[R-sig-ME] lme4.0

lancelot renaud.lancelot at cirad.fr
Sat Apr 7 11:17:28 CEST 2012 

Dear Ben,

The installation of lme4 from source does not work for me:

 > install.packages("lme4",repos="http://r-forge.r-project.org", 
type="source")
Installation d(es) package(s) dans ‘C:/R/RLIBS’
(car ‘lib’ n'est pas spécifié)
essai de l'URL 
'http://r-forge.r-project.org/src/contrib/lme4_0.999902344-0.tar.gz'
Content type 'application/x-gzip' length 1254848 bytes (1.2 Mb)
URL ouverte
downloaded 1.2 Mb
* installing *source* package 'lme4' ...
** libs
cygwin warning:
   MS-DOS style path detected: C:/R/etc/i386/Makeconf
   Preferred POSIX equivalent is: /cygdrive/c/R/etc/i386/Makeconf
   CYGWIN environment variable option "nodosfilewarning" turns off this 
warning.
   Consult the user's guide for more details about POSIX paths:
     http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE 
-I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2 
-Wall  -mtune=core2 -c external.cpp -o external.o
g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE 
-I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2 
-Wall  -mtune=core2 -c glmFamily.cpp -o glmFamily.o
g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE 
-I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2 
-Wall  -mtune=core2 -c mcmcsamp.cpp -o mcmcsamp.o
g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE 
-I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2 
-Wall  -mtune=core2 -c optimizer.cpp -o optimizer.o
g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE 
-I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2 
-Wall  -mtune=core2 -c predModule.cpp -o predModule.o
g++  -I"C:/R/include" -DNDEBUG -I. -DNDEBUG -DEIGEN_DONT_VECTORIZE 
-I"C:/R/RLIBS/Rcpp/include" -I"C:/R/RLIBS/RcppEigen/include"      -O2 
-Wall  -mtune=core2 -c respModule.cpp -o respModule.o
Syntax error: Unterminated quoted string
make: *** [lme4.dll] Error 2
ERROR: compilation failed for package 'lme4'
* removing 'C:/R/RLIBS/lme4'

Les packages source téléchargés sont dans
         ‘C:\Temp\RtmpYziZpk\downloaded_packages’
Messages d'avis :
1: l'exécution de la commande 'C:/R/bin/i386/R CMD INSTALL -l 
"C:/R/RLIBS" 
C:\Temp\RtmpYziZpk/downloaded_packages/lme4_0.999902344-0.tar.gz' 
renvoie un statut 1
2: In install.packages("lme4", repos = "http://r-forge.r-project.org",  :
   l'installation du package ‘lme4’ a eu un statut de sortie non nul


My configuration:

 > sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252 
LC_MONETARY=French_France.1252 LC_NUMERIC=C 
LC_TIME=French_France.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] fortunes_1.4-2

loaded via a namespace (and not attached):
[1] tools_2.15.0

All the best,

Renaud




Le 06/04/2012 13:34, Ben Bolker a écrit :
>    Things are discombobulated on R-forge, it looks like (as is not so
> unusual these days) -- perhaps due to the transition to R 2.15.
>
>    We've tried to put information at http://lme4.r-forge.r-project.org
> about current versions etc..
>
>    For right now, there are only three versions you should think about at
> all:
>
>    lme4 on CRAN "0.999375-42"
>    lme4 on r-forge -- development version, supersedes lme4Eigen and
> (eventually) CRAN-lme4
>    lme4.0 on r-forge: backward compatibility branch
>
>    Ben Bolker
>
>
> On 12-04-06 02:05 AM, Antonio P. Ramos wrote:
>> it doesn't work either though I am geting a weird error message:
>>
>>> install.packages("lme4.0", repos="http://r-forge.r-project.org",
>> type="source")
>> Installing package(s) into
>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>> (as ‘lib’ is unspecified)
>> trying URL 'http://r-forge.r-project.org/src/contrib/lme4.0_0.9999-1.tar.gz'
>> Content type 'application/x-gzip' length 1037389 bytes (1013 Kb)
>> opened URL
>> ==================================================
>> downloaded 1013 Kb
>>
>> * installing *source* package ‘lme4.0’ ...
>> ** libs
>> *** arch - i386
>> sh: make: command not found
>> ERROR: compilation failed for package ‘lme4.0’
>> * removing
>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/lme4.0’
>> Warning in install.packages :
>>    installation of package ‘lme4.0’ had non-zero exit status
>>
>> The downloaded packages are in
>> ‘/private/var/folders/fl/ckbqsv051f1fj4njt__g9thw0000gn/T/RtmpQnLuAo/downloaded_packages’
>>
>>
>>
>>
>>
>>
>> On Thu, Apr 5, 2012 at 10:55 PM, lancelot<renaud.lancelot at cirad.fr
>> <mailto:renaud.lancelot at cirad.fr>>  wrote:
>>
>>      Well...
>>
>>
>>      >  install.packages("lme4.0",__repos="http://r-forge.r-__project.org
>>      <http://r-forge.r-project.org>")
>>      Installation d(es) package(s) dans ‘C:/R/RLIBS’
>>      (car ‘lib’ n'est pas spécifié)
>>      Message d'avis :
>>
>>      package ‘lme4.0’ is not available (for R version 2.15.0)
>>
>>      lme4.0 seems to be available only from
>>      http://lme4.r-forge.r-project.__org/repos/src/contrib/
>>      <http://lme4.r-forge.r-project.org/repos/src/contrib/>
>>
>>      So it should be installed from source:
>>
>>      install.packages("lme4.0", repos="http://r-forge.r-__project.org
>>      <http://r-forge.r-project.org>", type="source")
>>
>>      which works fine for me.
>>
>>
>>      However, I now have on my system:
>>
>>      lme4
>>      lme4a
>>      lme4b
>>      lme4.0
>>      lme4Eigen
>>
>>      This is really confusing, even for lme4xxx aficionados!
>>
>>      All the best,
>>
>>      Renaud
>>
>>
>>
>>
>>
>>
>>      --
>>      Renaud Lancelot
>>      EDENext Project, coordinator: http://www.edenext.eu/
>>
>>      CIRAD, UMR15, Campus International de Baillarguet TA A-DIR / B
>>      F34398 Montpellier
>>
>>      Tel.  +33 4 67 59 37 17<tel:%2B33%204%2067%2059%2037%2017>   -  Fax
>>       +33 4 67 59 37 98<tel:%2B33%204%2067%2059%2037%2098>
>>      Secr. +33 4 67 59 37 37<tel:%2B33%204%2067%2059%2037%2037>   - Cell.
>>      +33 6 77 52 08 69<tel:%2B33%206%2077%2052%2008%2069>
>>
>>
>>      _________________________________________________
>>      R-sig-mixed-models at r-project.__org
>>      <mailto:R-sig-mixed-models at r-project.org>  mailing list
>>      https://stat.ethz.ch/mailman/__listinfo/r-sig-mixed-models
>>      <https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models>
>>
>>
>
>

-- 
Renaud Lancelot
EDENext Project, coordinator: http://www.edenext.eu/

CIRAD, UMR15, Campus International de Baillarguet TA A-DIR / B
F34398 Montpellier

Tel.  +33 4 67 59 37 17  -  Fax  +33 4 67 59 37 98
Secr. +33 4 67 59 37 37  - Cell. +33 6 77 52 08 69

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