[R-sig-genetics] Fw: Query regarding DAPC using ADEGENT in R

[Thibaut Jombart]

Hi,

what is the size of the dataset? Are you sure it did not display a graph of
cumulative variance and waits for your input? As you specified it, the
function is interactive and will wait on your input before giving results.

Best
Thibaut


--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology
Imperial College London
https://sites.google.com/site/thibautjombart/
https://github.com/thibautjombart
Twitter: @TeebzR <https://twitter.com/TeebzR>

On 1 September 2016 at 00:33, Graham Reynolds <greynold at unca.edu> wrote:

> Hi Rav, if you have multiple cores on your CPU you can distribute the task
> among them, which really speeds it up. That might at least let you see
> whether it is a problem with the dataset.
>
> grp <-find.clusters(app, max.n.clust=n, parallel = "multicore", ncpus = 4)
>
> You might need to install the Parallel package
>
> Cheers
>
>
> R. Graham Reynolds, Ph.D.
> Assistant Professor of Biology
> University of North Carolina Asheville
> www.caribbeanboas.org
>
>
>
> *From:* R-sig-genetics <r-sig-genetics-bounces at r-project.org> on behalf of
> Bhuller, Ravneet <ravneet.bhuller13 at imperial.ac.uk>
>
> > *Sent:* Wednesday, August 31, 2016 5:39 AM
> > *To:* r-sig-genetics at r-project.org
> > *Subject:* [R-sig-genetics] Query regarding DAPC using ADEGENT in R
> >
> > Dear All,
> >
> > I am trying to do DAPC on my genind object (app) using ADEGENET in R. But
> > when I run the following command:
> >
> > grp <- find.clusters(app)
> >
> > it is processing continuously for more than 2 hours but not producing any
> > output. Any guidance will be very much appreciated.
> >
> > Regards,
> >
> > Rav
> >
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