[R-sig-genetics] Fw: Query regarding DAPC using ADEGENT in R

[Graham Reynolds]

Hi Rav, if you have multiple cores on your CPU you can distribute the task
among them, which really speeds it up. That might at least let you see
whether it is a problem with the dataset.

grp <-find.clusters(app, max.n.clust=n, parallel = "multicore", ncpus = 4)

You might need to install the Parallel package

Cheers


R. Graham Reynolds, Ph.D.
Assistant Professor of Biology
University of North Carolina Asheville
www.caribbeanboas.org



*From:* R-sig-genetics <r-sig-genetics-bounces at r-project.org> on behalf of
Bhuller, Ravneet <ravneet.bhuller13 at imperial.ac.uk>

> *Sent:* Wednesday, August 31, 2016 5:39 AM
> *To:* r-sig-genetics at r-project.org
> *Subject:* [R-sig-genetics] Query regarding DAPC using ADEGENT in R
>
> Dear All,
>
> I am trying to do DAPC on my genind object (app) using ADEGENET in R. But
> when I run the following command:
>
> grp <- find.clusters(app)
>
> it is processing continuously for more than 2 hours but not producing any
> output. Any guidance will be very much appreciated.
>
> Regards,
>
> Rav
>
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