[R-pkg-devel] noL

[Jeff Newmiller]

It pays to read the archives before posting.... https://stat.ethz.ch/pipermail/r-package-devel/2019q2/003941.html

On May 16, 2019 6:31:19 AM PDT, "Goldfeld, Keith" <Keith.Goldfeld using nyulangone.org> wrote:
>Good morning -
>
>I have one final issue that is preventing me from a successful
>submission of my package simstudy to CRAN. In one of my examples, I sum
>a vector of probabilities and check to make sure they sum to one.
>
>I am getting an "noLD" error - so there is some issue with a long
>double. I
>am a at a bit of a loss on how to go about fixing this (would rounding
>help),
>but more importantly, how can I check this to make sure I have fixed it
>-
>since I do not get an error on my local system (and it passes all other
>checks.)
>
>I've included the log from the noLD
>(https://www.stats.ox.ac.uk/pub/bdr/noLD/simstudy.out) below.
>
>- Keith
>
>
>* checking examples ... ERROR
>Running examples in �simstudy-Ex.R� failed
>The error most likely occurred in:
>
>> ### Name: genCorOrdCat
>> ### Title: Generate correlated ordinal categorical data
>> ### Aliases: genCorOrdCat
>>
>> ### ** Examples
>>
>> #### Set definitions
>>
>> baseprobs <- matrix(c(0.2, 0.1, 0.1, 0.6,
>+                       0.7, 0.2, 0.1, 0,
>+                       0.5, 0.2, 0.3, 0,
>+                       0.4, 0.2, 0.4, 0,
>+                       0.6, 0.2, 0.2, 0),
>+                     nrow = 5, byrow = TRUE)
>>
>> set.seed(333)
>> dT <- genData(1000)
>>
>> dX <- genCorOrdCat(dT, adjVar = NULL, baseprobs = baseprobs,
>+                    prefix = "q", rho = .125, corstr = "cs")
>Error in genCorOrdCat(dT, adjVar = NULL, baseprobs = baseprobs, prefix
>= "q",  :
>  Probabilities are not properly specified
>Execution halted
>* checking for unstated dependencies in vignettes ... OK
>* checking package vignettes in �inst/doc� ... OK
>* checking re-building of vignette outputs ... OK
>* checking PDF version of manual ... OK
>* DONE
>
>Status: 1 ERROR
>See
>�/data/gannet/ripley/R/packages/tests-noLD/simstudy.Rcheck/00check.log�
>for details.
>
>
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