[R-pkg-devel] noL

[Gábor Csárdi]

To make sure that you have fixed it, you need an R build without long
double support. If you don't want to do this yourself, R-hub now has a
platform without long doubles, so you can do:

rhub::check(platform = "debian-gcc-devel-nold")

You can also do it locally with rhub::local_check_linux() or grab the
Docker image from
https://cloud.docker.com/u/rhub/repository/docker/rhub/debian-gcc-devel-nold

Cheers,
Gabor

On Thu, May 16, 2019 at 2:31 PM Goldfeld, Keith
<Keith.Goldfeld using nyulangone.org> wrote:
>
> Good morning -
>
> I have one final issue that is preventing me from a successful
> submission of my package simstudy to CRAN. In one of my examples, I sum
> a vector of probabilities and check to make sure they sum to one.
>
> I am getting an "noLD" error - so there is some issue with a long double. I
> am a at a bit of a loss on how to go about fixing this (would rounding help),
> but more importantly, how can I check this to make sure I have fixed it -
> since I do not get an error on my local system (and it passes all other
> checks.)
>
> I've included the log from the noLD
> (https://www.stats.ox.ac.uk/pub/bdr/noLD/simstudy.out) below.
>
> - Keith
>
>
> * checking examples ... ERROR
> Running examples in ‘simstudy-Ex.R’ failed
> The error most likely occurred in:
>
> > ### Name: genCorOrdCat
> > ### Title: Generate correlated ordinal categorical data
> > ### Aliases: genCorOrdCat
> >
> > ### ** Examples
> >
> > #### Set definitions
> >
> > baseprobs <- matrix(c(0.2, 0.1, 0.1, 0.6,
> +                       0.7, 0.2, 0.1, 0,
> +                       0.5, 0.2, 0.3, 0,
> +                       0.4, 0.2, 0.4, 0,
> +                       0.6, 0.2, 0.2, 0),
> +                     nrow = 5, byrow = TRUE)
> >
> > set.seed(333)
> > dT <- genData(1000)
> >
> > dX <- genCorOrdCat(dT, adjVar = NULL, baseprobs = baseprobs,
> +                    prefix = "q", rho = .125, corstr = "cs")
> Error in genCorOrdCat(dT, adjVar = NULL, baseprobs = baseprobs, prefix = "q",  :
>   Probabilities are not properly specified
> Execution halted
> * checking for unstated dependencies in vignettes ... OK
> * checking package vignettes in ‘inst/doc’ ... OK
> * checking re-building of vignette outputs ... OK
> * checking PDF version of manual ... OK
> * DONE
>
> Status: 1 ERROR
> See
>   ‘/data/gannet/ripley/R/packages/tests-noLD/simstudy.Rcheck/00check.log’
> for details.
>
>
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