[BioC] difference in RMA

[James MacDonald]

I would suggest you contact either Affy, GeneSpring or Partek.

Best,

Jim



Marco Fabbri wrote:
> Dear All,
> I am using the mouse gene 1.0 ST affymetrix. In order to run RMA I
> used expressionist console from affymetrix, genesping and partek.
> Genespring and partek give very similar results, instead expressionist
> console produce  much higher difference between samples.
> I tried to understand more but there is little information around. Any
> suggestion?
> 
> Thank you
> 
> 
> Marco

-- 
James W. MacDonald, MS
Biostatistician
UMCCC cDNA and Affymetrix Core
University of Michigan
1500 E Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623