[BioC] difference in RMA

[Marco Fabbri]

Dear All,
I am using the mouse gene 1.0 ST affymetrix. In order to run RMA I
used expressionist console from affymetrix, genesping and partek.
Genespring and partek give very similar results, instead expressionist
console produce  much higher difference between samples.
I tried to understand more but there is little information around. Any
suggestion?

Thank you


Marco
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Marco Fabbri
Istituto Clinico Humanitas
via Manzoni, 56
20089 Rozzano (Mi)
Tel. 028224 5130
Fax 028224 5101