[BioC] Bug in marray???

[Jean Yee Hwa Yang]

Hi Joern,

Thanks for the bug reporting.  We did notice the bug and it should be fix
in the version 1.5.5.  Please let me know if the problem still exist.

Cheers

Jean
On Tue, 4 May 2004, Joern Kamradt wrote:

> HI,
> Iam using the marray version 1.4.9 and R 1.9. Each time I try to import
> raw-files I get an error message (see below).
> Once I installed the old library marrayInput, the same command just works
> fine.
> Any help is very welcome
> 
> Joern
> 
> 
> > AZRAW <- read.marrayRaw(Resultfiles, path="~/AZstudy/AZResults",
> name.Gf="SG_Mean", name.Rf="SR_Mean", name.W="rQuality", gnames=Qiagen35KInfo,
> targets=SlideInfo, notes="created 5/3/04, including 82 samples, incl. SampleInfo
> and GenInfo")
> Error in file(con, "r") : unable to open connection
> In addition: Warning message:
> cannot open file `5912.xls'
> > Resultfiles
>  [1] "HV3-9-02.Result"  "HV3-9-03.Result"  "HV3-9-04.Result"
> "HV3-9-07.Result" 
>  [5] "HV3-9-08.Result"  "HV3-9-09.Result"  "HV3-9-10.Result"
> "HV3-9-11.Result" 
>  [9] "HV3-9-12.Result"  "HV3-9-13.Result"  "HV3-9-14.Result"
> "HV3-9-15.Result" 
> [13] "HV3-9-16.Result"  "HV3-9-17.Result"  "HV3-9-18.Result"
> "HV3-9-19.Result" 
> [17] "HV3-9-21.Result"  "HV3-9-22.Result"  "HV3-9-23.Result"
> "HV3-9-24.Result" 
> [21] "HV3-9-26.Result"  "HV3-9-27.Result"  "HV3-9-29.Result"
> "HV3-9-30.Result" 
> [25] "HV3-9-31.Result"  "HV3-9-32.Result"  "HV3-9-33.Result"
> "HV3-9-34.Result" 
> [29] "HV3-9-35.Result"  "HV3-9-36.Result"  "HV3-9-37.Result"
> "HV3-9-38.Result" 
> [33] "HV3-9-39.Result"  "HV3-9-41.Result"  "HV3-9-42.Result"
> "HV3-9-43.Result" 
> [37] "HV3-9-44.Result"  "HV3-9-45.Result"  "HV3-9-46.Result"
> "HV3-9-49.Result" 
> [41] "HV3-9-51.Result"  "HV3-9-52.Result"  "HV3-9-53.Result"
> "HV3-9-55.Result" 
> [45] "HV3-9-56.Result"  "HV3-9-57.Result"  "HV3-9-59.Result"
> "HV3-9-60.Result" 
> [49] "HV3-9-61.Result"  "HV3-9-62.Result"  "HV3-9-63.Result"
> "HV3-9-64.Result" 
> [53] "HV3-9-66.Result"  "HV3-9-67.Result"  "HV3-9-68.Result"
> "HV3-9-69.Result" 
> [57] "HV3-9-70.Result"  "HV3-9-71.Result"  "HV3-9-72.Result"
> "HV3-9-73.Result" 
> [61] "HV3-9-75.Result"  "HV3-9-77.Result"  "HV3-9-78.Result"
> "HV3-9-79.Result" 
> [65] "HV3-9-80.Result"  "HV3-9-81.Result"  "HV3-9-82.Result"
> "HV3-9-84.Result" 
> [69] "HV3-9-85.Result"  "HV3-9-86.Result"  "HV3-9-88.Result"
> "HV3-9-89.Result" 
> [73] "HV3-9-90.Result"  "HV3-9-91.Result"  "HV3-9-92.Result"
> "HV3-9-94.Result" 
> [77] "HV3-9-95.Result"  "HV3-9-96.Result"  "HV3-9-97.Result"
> "HV3-9-98.Result" 
> [81] "HV3-9-99.Result"  "HV3-9-100.Result"
> > AZRAW <- read.marrayRaw(fnames=Resultfiles, path="~/AZstudy/AZResults",
> name.Gf="SG_Mean", name.Rf="SR_Mean", name.W="rQuality", gnames=Qiagen35KInfo,
> targets=SlideInfo, notes="created 5/3/04, including 82 samples, incl. SampleInfo
> and GenInfo")
> Error in file(con, "r") : unable to open connection
> In addition: Warning message:
> cannot open file `5912.xls'
> > AZRAW <- read.marrayRaw(fnames=Resultfiles,
> path="/Users/joern/AZstudy/AZResults", name.Gf="SG_Mean", name.Rf="SR_Mean",
> name.W="rQuality", gnames=Qiagen35KInfo, targets=SlideInfo, notes="created
> 5/3/04, including 82 samples, incl. SampleInfo and GenInfo")
> Error in file(con, "r") : unable to open connection
> In addition: Warning message:
> cannot open file `5912.xls'
> 
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