Peter.Robinson at t-online.de
Wed May 5 06:05:07 CEST 2004
I have been making a summary HTML page for QC for all Chips in an experiment
by extracting salient features from the RPT files with Perl and displaying
them as a table and creating images such as RNAdeg plots in R. This page is
linked to other pages with expression data/differentially regulated genes
from the Chips.
I will look into RSPerl (thanks for the tip!).
Wednesday 05 May 2004 02:13, you wrote:
> Why not just do it with R? Or if you really insist on perl then you
> might want to look at RSPerl (from www.omegahat.org)
> On Tue, May 04, 2004 at 11:55:10PM +0200, peter robinson wrote:
> > Dear Bioconductors,
> > I have been experimenting with various ways of scripting the analysis of
> > affymetrix data with bioconductor and perl. I would like to more or less
> > automatically create a set of HTML pages with summary data and images of
> > the chips, RNA degradation plots etc. I would like to use a perl module
> > such as Statistics::R to send commands that the perl script generates
> > based on file names of the CEL files and some parameters.
> > Has anyone on the list experience with doing things like that? Would
> > anybody be willing to share some examples? (Googling turned up
> > nothing...).
> > Thanks
> > Peter
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