[Bioc-devel] package submission - problem with vignette
dtenenba at fredhutch.org
Mon Apr 11 18:29:30 CEST 2016
It means that when you run R CMD build YourPackageName, the vignette is not built.
It simply looks in the output of R CMD build for a line that starts:
* creating vignettes ...
If this line is present, it means `R` has not detected that a vignette
needs to be built.
It's `REQUIRED` that the vignette be built.
If you have vignette sources yet still get this message, there could
be several causes:
* Missing or invalid `VignetteBuilder` line in the `DESCRIPTION` file.
* Missing or invalid `VignetteEngine` line in the vignette source.
See `knitr`'s [package vignette](http://yihui.name/knitr/demo/vignette/)
page, or the
section of "Writing R Extensions" for more information.
----- Original Message -----
> From: "Lara Urban" <lara.h.urban at ebi.ac.uk>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Monday, April 11, 2016 8:58:14 AM
> Subject: [Bioc-devel] package submission - problem with vignette
> Dear BiocDevel,
> I have a question regarding the submission of my package; thank you very
> much in advance.
> I have submitted my package to Bioconductor a few days ago and it passed
> build, check and bioccheck. Now, that I had to change just one line in my R
> code and submitted it again, I get an error on all three platforms, because
> it is required that my vignette is built by R CMD build; however, I still
> have my Rmd file in the order vignettes as before. Shouldn't it build
> automatically? Do you have any ideas what is going wrong here?
> Many thanks and kind regards,
> Lara Urban
> Predoctoral Fellow
> EMBL-European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton, Cambridge
> CB10 1SD
> United Kingdom
> PhD Student
> Wolfson College
> University of Cambridge
> phone: + 49 (0) 176 76 37 99 03 <%2B%2044%20%280%29%201223%20494%20655>
> email: lara.h.urban at ebi.ac.uk <rfs32 at cam.ac.uk>
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