[Bioc-devel] package submission - problem with vignette
dtenenba at fredhutch.org
Mon Apr 11 18:39:26 CEST 2016
----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Lara Urban" <lara.h.urban at ebi.ac.uk>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Monday, April 11, 2016 9:29:30 AM
> Subject: Re: [Bioc-devel] package submission - problem with vignette
> It means that when you run R CMD build YourPackageName, the vignette is not
> It simply looks in the output of R CMD build for a line that starts:
> * creating vignettes ...
> If this line is present, it means `R` has not detected that a vignette
> needs to be built.
Oops, that should say: "If this line is NOT present..."
> It's `REQUIRED` that the vignette be built.
> If you have vignette sources yet still get this message, there could
> be several causes:
> * Missing or invalid `VignetteBuilder` line in the `DESCRIPTION` file.
> * Missing or invalid `VignetteEngine` line in the vignette source.
> See `knitr`'s [package vignette](http://yihui.name/knitr/demo/vignette/)
> page, or the
> section of "Writing R Extensions" for more information.
> ----- Original Message -----
>> From: "Lara Urban" <lara.h.urban at ebi.ac.uk>
>> To: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Monday, April 11, 2016 8:58:14 AM
>> Subject: [Bioc-devel] package submission - problem with vignette
>> Dear BiocDevel,
>> I have a question regarding the submission of my package; thank you very
>> much in advance.
>> I have submitted my package to Bioconductor a few days ago and it passed
>> build, check and bioccheck. Now, that I had to change just one line in my R
>> code and submitted it again, I get an error on all three platforms, because
>> it is required that my vignette is built by R CMD build; however, I still
>> have my Rmd file in the order vignettes as before. Shouldn't it build
>> automatically? Do you have any ideas what is going wrong here?
>> Many thanks and kind regards,
>> Lara Urban
>> Predoctoral Fellow
>> EMBL-European Bioinformatics Institute
>> Wellcome Trust Genome Campus
>> Hinxton, Cambridge
>> CB10 1SD
>> United Kingdom
>> PhD Student
>> Wolfson College
>> University of Cambridge
>> phone: + 49 (0) 176 76 37 99 03 <%2B%2044%20%280%29%201223%20494%20655>
>> email: lara.h.urban at ebi.ac.uk <rfs32 at cam.ac.uk>
>> [[alternative HTML version deleted]]
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