[Bioc-devel] R CMD CHECK error in examples

Dan Tenenbaum dtenenba at fredhutch.org
Fri Apr 1 19:42:05 CEST 2016

Can we see the code to your package?
Hi Karl,

It might be good to first fix the issue preventing vignette build in devel:


Then we can take a look at the R CMD check issue. Note that Bioconductor does not run check with the --as-cran flag.


----- Original Message -----
> From: "Karl Stamm" <karl.stamm at gmail.com>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Friday, April 1, 2016 10:36:37 AM
> Subject: [Bioc-devel] R CMD CHECK error in examples

> I've had this problem for a long time, so it might be a configuration
> setting, and I need your help.
> When running CHECK --as-cran etc the vast majority passes, but it always
> fails when running the examples before it gets to my code.
> * checking examples ... ERROR
> Running examples in 'rgsepd-Ex.R' failed
> ...snip
>> library('rgsepd')
> Error in library("rgsepd") : there is no package called 'rgsepd'
> It looks like something is forgetting to INSTALL the package before it can
> run any examples. It's clearly been installed to do every other part of the
> process. Is there some library location problem you suppose?
> Note I'm double-checking things because my package is failing to build for
> some reason on moscato. In this past when this has happened without my
> changing anything, it was some dependency having changed. So here I am
> again updating everything to debug.
>	[[alternative HTML version deleted]]
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