[Bioc-devel] BiocCheck Local and Single Package Builder Discrepancy

[David Kuo]

Hi,

I'm observing different results from executing BiocCheck, version 1.7.9 locally and the build output. 

The tar.gz output locally shows no Warnings and outputs this:
======================================
* Checking for support site registration...
* Maintainer is registered at support site!


The Single Package Builder, on the other hand, outputs this from the same tar.gz:
======================================
* Checking for bioc-devel mailing list subscription...
    * REQUIRED: Maintainer should subscribe to the bioc-devel mailing
      list. Subscribe here:
      https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
* Maintainer is registered at support site!

There doesn't seem to be a check on on the local version of BiocCheck that matches the Single Package Builder version and thus, we're struggling to fix this mailing list subscription warning. Also puzzling to us is that the Maintainer has the same email attached to an older version of our package (MMDiff).

Any help or guidance would be greatly appreciated.

Thanks,
David 

> sessionInfo()
R Under development (unstable) (2016-03-28 r70390)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.4 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets  methods  
[9] base     

other attached packages:
 [1] MMDiff2_0.99.6        BiocCheck_1.7.9       Biobase_2.31.3       
 [4] Rsamtools_1.23.6      Biostrings_2.39.12    XVector_0.11.7       
 [7] GenomicRanges_1.23.25 GenomeInfoDb_1.7.6    IRanges_2.5.40       
[10] S4Vectors_0.9.44      BiocGenerics_0.17.3   httr_1.1.0           

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.4                 formatR_1.3                
 [3] plyr_1.8.3                  BiocInstaller_1.21.4       
 [5] RColorBrewer_1.1-2          bitops_1.0-6               
 [7] tools_3.4.0                 zlibbioc_1.17.1            
 [9] digest_0.6.9                jsonlite_0.9.19            
[11] lattice_0.20-33             memoise_1.0.0              
[13] gtable_0.2.0                BSgenome_1.39.4            
[15] graph_1.49.1                shiny_0.13.2               
[17] curl_0.9.6                  stringr_1.0.0              
[19] rtracklayer_1.31.9          knitr_1.12.3               
[21] devtools_1.10.0             locfit_1.5-9.1             
[23] grid_3.4.0                  getopt_1.20.0              
[25] optparse_1.3.2              R6_2.1.2                   
[27] XML_3.98-1.4                RBGL_1.47.0                
[29] BiocParallel_1.5.21         magrittr_1.5               
[31] ggplot2_2.1.0               htmltools_0.3.5            
[33] scales_0.4.0                codetools_0.2-14           
[35] biocViews_1.39.8            GenomicAlignments_1.7.20   
[37] RUnit_0.4.31                SummarizedExperiment_1.1.22
[39] xtable_1.8-2                mime_0.4                   
[41] colorspace_1.2-6            httpuv_1.3.3               
[43] stringi_1.0-1               RCurl_1.95-4.8             
[45] munsell_0.4.3