Last updated on 2024-12-23 12:49:43 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ACNE | 3 | 10 | |
| aroma.affymetrix | 9 | 4 | |
| aroma.apd | 2 | 11 | |
| aroma.cn | 2 | 11 | |
| aroma.core | 11 | 2 | |
| calmate | 1 | 12 | |
| dChipIO | 13 | ||
| doFuture | 3 | 10 | |
| future | 13 | ||
| future.apply | 13 | ||
| future.batchtools | 3 | 10 | |
| future.callr | 13 | ||
| future.mirai | 13 | ||
| future.tests | 13 | ||
| futureverse | 13 | ||
| globals | 3 | 10 | |
| listenv | 13 | ||
| matrixStats | 13 | ||
| parallelly | 13 | ||
| port4me | 13 | ||
| profmem | 1 | 12 | |
| progressr | 13 | ||
| PSCBS | 3 | 10 | |
| R.cache | 10 | 3 | |
| R.devices | 1 | 12 | |
| R.filesets | 13 | ||
| R.huge | 13 | ||
| R.matlab | 10 | 3 | |
| R.methodsS3 | 13 | ||
| R.oo | 13 | ||
| R.rsp | 13 | ||
| R.utils | 3 | 10 | |
| seguid | 13 | ||
| startup | 13 | ||
| TopDom | 10 | 3 |
Current CRAN status: NOTE: 3, OK: 10
Version: 0.9.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
doACNE.Rd: AffymetrixCelSet, Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 9, OK: 4
Version: 3.2.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
SmoothMultiarrayModel.Rd: ChromosomalModel,
CopyNumberSegmentationModel
byPath.AffymetrixFileSet.Rd: GenericDataFile
calculateBaseline.ChipEffectSet.Rd: getAverageFile
doCRMAv1.Rd: Verbose
doCRMAv2.Rd: Verbose
doFIRMA.Rd: Verbose
doGCRMA.Rd: Verbose
doRMA.Rd: Verbose
justRMA.Rd: Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.2.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
SmoothMultiarrayModel.Rd: ChromosomalModel,
CopyNumberSegmentationModel
byPath.AffymetrixFileSet.Rd: GenericDataFile
calculateBaseline.ChipEffectSet.Rd: getAverageFile
doCRMAv1.Rd: Verbose
doCRMAv2.Rd: Verbose
doFIRMA.Rd: Verbose
doGCRMA.Rd: Verbose
doRMA.Rd: Verbose
justRMA.Rd: Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 3.2.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘AffymetrixDataTestFiles’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 3.2.2
Check: installed package size
Result: NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
R 3.0Mb
help 1.1Mb
testScripts 1.1Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
'AffymetrixDataTestFiles'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 3.2.2
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘affxparser’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.7.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘affxparser’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 1.7.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GLAD’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 11, OK: 2
Version: 3.3.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile
writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet
writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Package unavailable to check Rd xrefs: ‘GLAD’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.3.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile
writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet
writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 3.3.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 3.3.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 3.3.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GLAD’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.13.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘aroma.core’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 1.0.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
doFuture.Rd: foreach, future
grapes-dofuture-grapes.Rd: %dopar%
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.12.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
nbrOfWorkers.batchtools.Rd: plan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.16.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
globalsOf.Rd: codetools
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.6.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘profmem.md.rsp’ using rsp
R.utils v2.12.3 (2023-11-18 01:00:02 UTC) successfully loaded. See ?R.utils for help.
Attaching package: ‘R.utils’
The following object is masked from ‘package:utils’:
timestamp
The following objects are masked from ‘package:base’:
cat, commandArgs, getOption, isOpen, nullfile, parse, use, warnings
Error: processing vignette 'profmem.md.rsp' failed with diagnostics:
there is no package called ‘microbenchmark’
--- failed re-building ‘profmem.md.rsp’
SUMMARY: processing the following file failed:
‘profmem.md.rsp’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.67.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
as.CBS.DNAcopy.Rd: DNAcopy
as.DNAcopy.CBS.Rd: DNAcopy
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 0.16.0
Check: Rd files
Result: NOTE
checkRd: (-1) R.cache-package.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) R.cache-package.Rd:31-34: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 2.17.2
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-release-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 3.7.0
Check: Rd files
Result: NOTE
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2.12.3
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
TimeoutException.Rd: Exception
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.10.1
Check: Rd files
Result: NOTE
checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup?
21 | Recommended range is in {5, ..., 20}.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64