CRAN Package Check Results for Maintainer ‘Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>’

Last updated on 2024-12-23 12:49:38 CET.

Package ERROR NOTE OK
ade4 13
ade4TkGUI 13
adegraphics 4 9
adephylo 3 10
adespatial 13
aods3 13
CINID 13
DRomics 1 6 6
fitdistrplus 13
Interatrix 13
LDcorSV 13
LifemapR 1 12
MareyMap 13
Mondrian 13
nlsMicrobio 13
nlstools 13
OnAge 13
phylter 10 3

Package ade4

Current CRAN status: NOTE: 13

Version: 1.7-22
Check: Rd files
Result: NOTE checkRd: (-1) varipart.Rd:19: Lost braces 19 | \item{type}{a character specifying the algorithm which should be used to adjust R-squared (either \code{"simulated"} or \ code{"parametric"}).} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.7-22
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘sp’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.7-22
Check: installed package size
Result: NOTE installed size is 9.1Mb sub-directories of 1Mb or more: R 2.0Mb data 3.0Mb libs 2.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ade4TkGUI

Current CRAN status: OK: 13

Package adegraphics

Current CRAN status: NOTE: 4, OK: 9

Version: 1.0-21
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: R 2.0Mb doc 2.7Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package adephylo

Current CRAN status: NOTE: 3, OK: 10

Version: 1.1-16
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: abouheif.Rd: phylo4d-class adephylo-package.Rd: phylo4d-class, phylo4-class bullseye.Rd: phylo4-class, phylo4d-class distRoot.Rd: phylo4-class, phylo4d-class distTips.Rd: phylo4-class, phylo4d-class listDD.Rd: phylo4-class, phylo4d-class listTips.Rd: phylo4-class, phylo4d-class miscUtils.Rd: phylo4-class orthobasis.Rd: phylo4-class, phylo4d-class orthogram.Rd: phylo4-class, phylo4d-class ppca.Rd: phylo4d-class, phylo4-class proxTips.Rd: phylo4-class, phylo4d-class sp.tips.Rd: phylo4-class, phylo4d-class table.phylo4d.Rd: phylo4d-class treePart.Rd: phylo4-class, phylo4d-class Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package adespatial

Current CRAN status: OK: 13

Package aods3

Current CRAN status: OK: 13

Package CINID

Current CRAN status: OK: 13

Package DRomics

Current CRAN status: ERROR: 1, NOTE: 6, OK: 6

Version: 2.6-2
Check: package dependencies
Result: ERROR Package required but not available: ‘DESeq2’ Package suggested but not available for checking: ‘sva’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.6-2
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 2.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package fitdistrplus

Current CRAN status: OK: 13

Package Interatrix

Current CRAN status: OK: 13

Package LDcorSV

Current CRAN status: OK: 13

Package LifemapR

Current CRAN status: ERROR: 1, OK: 12

Version: 1.1.4
Check: package dependencies
Result: ERROR Packages required but not available: 'leaflet', 'leaflet.minicharts' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Package MareyMap

Current CRAN status: OK: 13

Package Mondrian

Current CRAN status: OK: 13

Package nlsMicrobio

Current CRAN status: OK: 13

Package nlstools

Current CRAN status: OK: 13

Package OnAge

Current CRAN status: OK: 13

Package phylter

Current CRAN status: NOTE: 10, OK: 3

Version: 0.9.11
Check: Rd files
Result: NOTE checkRd: (-1) phylter.Rd:51: Lost braces; missing escapes or markup? 51 | the output ({out$DiscardedGenes}).} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64