[R-sig-ME] error in glmmTMB when adding glmmTMBControl: unused arguments

[Ben Bolker]

A reproducible example would be useful.  This works (with the
development version
of glmmTMB, but I'd be surprised if it broke since the last CRAN release ...)

library(glmmTMB)

m1 <- glmmTMB(count~ mined + (1|site),
              zi=~mined,
              family=poisson, data=Salamanders,
  control=glmmTMBControl(optCtrl=list(iter.max=1e3,
                                      eval.max=1e3),
                         profile=TRUE))

what's your sessionInfo()?

Maybe obvious, but it would probably be efficient to do some
troubleshooting/model-checking on a
smaller subset of your data, if you haven't already ...

On Mon, Feb 12, 2018 at 3:04 AM, Diego Pavon
<diego.pavonjordan at gmail.com> wrote:
> Dear list
>
> I am trying to run this model
>
> M1.zi <- glmmTMB(Abundance ~ Temp_std + NEness_std + WithinNatura +
> Winter_std
>                  + WithinNatura * Winter_std + NEness_std * Winter_std +
> Temp_std * WithinNatura
>                  + WithinNatura * Winter_std  * NEness_std
>                  + (1|fWinter/site) + (1|species),
>                  family = poisson,
>                  ziformula = ~ 1,
>                  data = AllSpecies)
>
> but after a couple of days (I have 3.5 million data points), I finally got
> an error:
>
> Error in optimHess(par.fixed, obj$fn, obj$gr) :
>   gradient in optim evaluated to length 1 not 14
> In addition: There were 11 warnings (use warnings() to see them)
>
>
> Then I tried to add the CONTROL argument following
> https://cran.r-project.org/web/packages/glmmTMB/glmmTMB.pdf:
>
> M1.zi <- glmmTMB(Abundance ~ Temp_std + NEness_std + WithinNatura +
> Winter_std
>                  + WithinNatura * Winter_std + NEness_std * Winter_std +
> Temp_std * WithinNatura
>                  + WithinNatura * Winter_std  * NEness_std
>                  + (1|fWinter/site) + (1|species),
>                  family = poisson,
>                  control = glmmTMBControl(optCtrl = list(iter.max = 1000,
> eval.max = 1000), profile = TRUE, collect = FALSE),
>                  ziformula = ~ 1,
>                  data = AllSpecies)
>
>
> For some reason, I get this error message:
>
> Error in glmmTMB(Abundance ~ Temp_std + NEness_std + WithinNatura +
> Winter_std +  :
>   unused argument (control = glmmTMBControl(optCtrl = list(iter.max = 1000,
> eval.max = 1000), profile = TRUE, collect = FALSE))
>
>
> Does anyone have an idea how to specify the control arguments? I suspect
> this is some small thing I am missing but I can't see it anymore...
>
> Thank you very much for your time and help.
>
> Best
>
> Diego
>
>
>
> --
> *Diego Pavón Jordán*
>
> *Finnish Museum of Natural History*
> *PO BOX 17 *
>
> *Helsinki. Finland*
>
> *0445061210https://www.researchgate.net/profile/Diego_Pavon-jordan
> <https://www.researchgate.net/profile/Diego_Pavon-jordan>*
>
>         [[alternative HTML version deleted]]
>
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