[R-sig-ME] Error in glmmADMB: no PSV file found -- link to known fix is broken

Ben Bolker bbolker at gmail.com
Thu Sep 29 21:59:27 CEST 2016



The maintainer has let me know the new URL is
http://buildbot.admb-project.org/glmmadmb/ . I'll update the
documentation/web page

    -------- Forwarded Message --------
    Subject: [R-sig-ME] Error in glmmADMB: no PSV file found -- link to
    known fix is broken
    Date: Thu, 29 Sep 2016 12:36:42 -0500
    From: Mark Albins <kamokoi55 at gmail.com <mailto:kamokoi55 at gmail.com>>
    To: r-sig-mixed-models at r-project.org
    <mailto:r-sig-mixed-models at r-project.org>

    Hi r-sig-ME-ers,

    I'm running a glmmADMB model with a single random effect, zero
    inflation,
    and a negative binomial distribution (session info below).  The
    model seems
    to run fine on its own (i.e. no error message, sensible outcome,
    etc.), but
    throws a "no PSV file found" error when I try to run it with mcmc =
    TRUE.

    I found the following solution to a similar problem posted here on the
    r-sig-ME list:

    https://stat.ethz.ch/pipermail/r-sig-mixed-models/2016q1/024490.html
    <https://stat.ethz.ch/pipermail/r-sig-mixed-models/2016q1/024490.html>

    Unfortunately, when I tried to follow the instructions at:

    http://glmmadmb.r-forge.r-project.org/
    <http://glmmadmb.r-forge.r-project.org/>

    ..I found the link to the "Buildbot page" was broken...

    http://www.admb-project.org/buildbot/glmmadmb/
    <http://www.admb-project.org/buildbot/glmmadmb/>

    A google search for "glmmADMB buildbot page" did not uncover any obvious
    alternate locations for the various OS compatible binaries.

    I don't know how to build the binary from its TPL on my system.

    Any suggestions?

    Thanks!

    Mark Albins

    R version 3.3.1 (2016-06-21)
    Platform: x86_64-w64-mingw32/x64 (64-bit)
    Running under: Windows 7 x64 (build 7601) Service Pack 1

    locale:
    [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
    States.1252
    [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
    [5] LC_TIME=English_United States.1252

    attached base packages:
    [1] stats     graphics  grDevices utils     datasets  methods   base

    other attached packages:
    [1] glmmADMB_0.8.3.3 MASS_7.3-45      ggplot2_2.1.0    lattice_0.20-33
    [5] nlme_3.1-128

    loaded via a namespace (and not attached):
     [1] Rcpp_0.12.6      digest_0.6.10    grid_3.3.1       plyr_1.8.4
     [5] gtable_0.2.0     magrittr_1.5     coda_0.18-1      scales_0.4.0
     [9] stringi_1.1.1    Matrix_1.2-6     labeling_0.3     tools_3.3.1
    [13] stringr_1.1.0    munsell_0.4.3    colorspace_1.2-6 R2admb_0.7.13

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