[R-sig-ME] Problem installing RLRsim

[Daniel Ezra Johnson]

A similar error used to occur for me when trying to install R packages
on an office computer to which I was not a "super-user". I think it's
having trouble writing to the Library directory.

Dan

On Fri, Jun 12, 2009 at 9:16 AM, Chuck Cleland<ccleland at optonline.net> wrote:
> On 6/12/2009 8:00 AM, Margaret Mackinnon wrote:
>> Hi
>>
>> I am trying to install RLRsim.  I get an error message (below) saying that access is denied to one of the files
>>
>> Error:  Access is denied.
>> Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll
>>
>> Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI.
>>
>> Thanks in advance for advice.
>
>  It works for me using install.packages():
>
>> install.packages("RLRsim")
> --- Please select a CRAN mirror for use in this session ---
> trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/RLRsim_2.0-2.zip'
> Content type 'application/zip' length 254255 bytes (248 Kb)
> opened URL
> downloaded 248 Kb
>
> package 'RLRsim' successfully unpacked and MD5 sums checked
>
> The downloaded packages are in
>        C:\Documents and Settings\Chuck\Local
> Settings\Temp\RtmpDyABNe\downloaded_packages
> updating HTML package descriptions
>
>> library(RLRsim)
>
>> library(mgcv)
> This is mgcv  1.5-5 . For overview type `help("mgcv-package")'.
>
>> data(trees)
>
>> m.q<-gamm(I(log(Volume)) ~ Height + s(Girth, m = 3), data = trees,
> method = "REML")$lme
>
> Loading required package: nlme
>
>> exactRLRT(m.q)
>
>        simulated finite sample distribution of RLRT.  (p-value based on
> 10000 simulated values)
>
> data:
> RLRT = 0, p-value = 1
>
>> sessionInfo()
> R version 2.9.0 Patched (2009-05-23 r48600)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] nlme_3.1-92  mgcv_1.5-5   RLRsim_2.0-2
>
> loaded via a namespace (and not attached):
> [1] grid_2.9.0      lattice_0.17-25 tools_2.9.0
>
>> Margaret
>>
>> Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\"
>> Use Path: yes   Overlay Files: no
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\
>> Extracting RLRsim.chm
>> Extracting CONTENTS
>> Extracting DESCRIPTION
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\
>> Extracting AnIndex
>> Extracting exactLRT
>> Extracting exactRLRT
>> Extracting extract.lmeDesign
>> Extracting LRTSim
>> Extracting RLRsim-package
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\
>> Extracting 00Index.html
>> Extracting exactLRT.html
>> Extracting exactRLRT.html
>> Extracting extract.lmeDesign.html
>> Extracting LRTSim.html
>> Extracting RLRsim-package.html
>> Extracting INDEX
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\
>> Extracting exactLRT.tex
>> Extracting exactRLRT.tex
>> Extracting extract.lmeDesign.tex
>> Extracting LRTSim.tex
>> Extracting RLRsim-package.tex
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\
>> Error:  Access is denied.
>> Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\
>> Extracting RLRsim.Rd.gz
>> Extracting MD5
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\
>> Extracting hsearch.rds
>> Extracting nsInfo.rds
>> Extracting package.rds
>> Extracting Rd.rds
>> Extracting NAMESPACE
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\
>> Extracting RLRsim
>> Extracting RLRsim.rdb
>> Extracting RLRsim.rdx
>> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\
>> Extracting exactLRT.R
>> Extracting exactRLRT.R
>> Extracting extract.lmeDesign.R
>> Extracting LRTSim.R
>>
>>
>>
>> Dr. Margaret Mackinnon
>>
>> KEMRI-Wellcome Collaborative Programme, Coast
>> PO Box 230
>> Kilifi
>> Kenya
>> mmackinnon at kilifi.kemri-wellcome.org
>> + 254 417 522535 Ext 228
>> + 254 417 522390
>>
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>
> --
> Chuck Cleland, Ph.D.
> NDRI, Inc. (www.ndri.org)
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